View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_high_41 (Length: 222)

Name: NF15523_high_41
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_high_41
NF15523_high_41
[»] chr6 (23 HSPs)
chr6 (1-184)||(27677347-27677528)
chr6 (1-203)||(27592738-27592934)
chr6 (1-203)||(27679219-27679415)
chr6 (1-203)||(27706121-27706316)
chr6 (1-184)||(26802715-26802896)
chr6 (1-162)||(27604460-27604619)
chr6 (1-95)||(27698314-27698408)
chr6 (1-76)||(27718218-27718293)
chr6 (1-76)||(27610841-27610916)
chr6 (34-92)||(25538846-25538904)
chr6 (34-90)||(25580025-25580081)
chr6 (34-90)||(26143171-26143227)
chr6 (1-95)||(26861886-26861977)
chr6 (1-60)||(27427461-27427520)
chr6 (34-92)||(26056232-26056290)
chr6 (34-92)||(26076202-26076260)
chr6 (1-92)||(26884438-26884526)
chr6 (20-90)||(26646771-26646838)
chr6 (20-90)||(26752739-26752806)
chr6 (1-66)||(28781412-28781477)
chr6 (1-66)||(28786551-28786616)
chr6 (1-66)||(28792672-28792737)
chr6 (34-90)||(25482048-25482104)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-76)||(3259-3334)
scaffold0349 (1-76)||(14195-14270)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-60)||(59843-59902)
[»] chr4 (3 HSPs)
chr4 (1-60)||(18074035-18074094)
chr4 (2-66)||(18655313-18655377)
chr4 (2-66)||(18723921-18723985)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-57)||(4529-4585)
scaffold0277 (20-57)||(13490-13527)
[»] scaffold0419 (1 HSPs)
scaffold0419 (20-57)||(7817-7854)
[»] chr1 (1 HSPs)
chr1 (34-92)||(28127492-28127547)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27677528 - 27677347
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  27677528 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta--ttt 27677431  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatata 184  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27677430 ttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatata 27677347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27592934 - 27592738
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  27592934 aggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta--ttt 27592837  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatatatatacagttttaaaca 200  Q
       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  27592836 ttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttt----tatatacagttttaaaca 27592741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27679219 - 27679415
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    ||||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  27679219 aggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta--ttt 27679316  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatatatatacagttttaaaca 200  Q
       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  27679317 ttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttt----tatatacagttttaaaca 27679412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27706316 - 27706121
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  27706316 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta--ttt 27706219  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatatatatacagttttaaaca 200  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    ||||||||||||||||||    
T  27706218 ttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaa-gtttaaagggaaataccttttt----tatatacagttttaaaca 27706124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26802715 - 26802896
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         
T  26802715 aggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatccta--ttt 26802812  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatata 184  Q
       |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  26802813 ttcccttttatattttatttcttcaacttcaatttcccaataatctcatcttaaaggttaaatgggaaatacctttcttatata 26802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27604619 - 27604460
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctannnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| |||||||||         
T  27604619 aggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatccta--ttt 27604522  T
Q  101 nnnccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaa 162  Q
       |||||| |||||| ||| ||||| ||||||| | |||||||||||| || |||||||||    
T  27604521 ttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaa 27604460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27698408 - 27698314
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta 95  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27698408 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatccta 27698314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27718293 - 27718218
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27718293 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

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Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27610916 - 27610841
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 76  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  27610916 aggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctgggtacc 27610841  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 25538846 - 25538904
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 92  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  25538846 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 25538904  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 25580025 - 25580081
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaa 90  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||    
T  25580025 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 26143171 - 26143227
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaa 90  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||    
T  26143171 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 26143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 26861886 - 26861977
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatccta 95  Q
    ||||||||| |||||||||| ||||||| ||| |||||||||||||| |||||||||  |||   |||||||||||| |||| || |||||||||    
T  26861886 aggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttag---tcctgggtaccccacttaacataaatccta 26861977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27427520 - 27427461
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgat 60  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| || |||||||||||    
T  27427520 aggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

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Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 26056232 - 26056290
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 92  Q
    |||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||||    
T  26056232 gctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatc 26056290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 26076202 - 26076260
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 92  Q
    |||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||||    
T  26076202 gctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatc 26076260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26884438 - 26884526
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 92  Q
    |||||||||||||||||| ||||| |||| || | ||||||||||||||||||||||  |||   || |||||| || ||||||||||||||    
T  26884438 aggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttag---tcttgggtatcccactttacttaaatc 26884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 26646771 - 26646838
Alignment:
Q  20 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaa 90  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||||   |||||||||||| ||||||||||||    
T  26646771 tggctctgacccaagctgctaacttgtccggataccattatag---tcctgggtaccccactttacttaaa 26646838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 26752739 - 26752806
Alignment:
Q  20 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaa 90  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||||   |||||||||||| ||||||||||||    
T  26752739 tggctctgacccaagctgctaacttgtccggataccattatag---tcctgggtaccccactttacttaaa 26752806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28781412 - 28781477
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 66  Q
    |||||||| | ||||||  ||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28781412 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

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Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28786551 - 28786616
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 66  Q
    |||||||| | ||||||  ||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28786551 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28792672 - 28792737
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 66  Q
    |||||||| | ||||||  ||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28792672 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 25482048 - 25482104
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaa 90  Q
    |||||||| ||||||||||| ||| ||||||||| || |||||| ||||||||||||    
T  25482048 gctgctaatttgtccggctatcattatagtcctcatgagtaccccactttacttaaa 25482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3334 - 3259
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3334 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

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Target: scaffold0349; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14270 - 14195
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 76  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14270 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 59843 - 59902
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgat 60  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| || |||||||||||    
T  59843 aggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18074035 - 18074094
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgat 60  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| || |||||||||||    
T  18074035 aggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 18655377 - 18655313
Alignment:
Q  2 ggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 66  Q
    ||||||| | ||||||  ||||||||| | | ||||||||||||||||||||||||  |||||||    
T  18655377 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 18723985 - 18723921
Alignment:
Q  2 ggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 66  Q
    ||||||| | ||||||  ||||||||| | | ||||||||||||||||||||||||  |||||||    
T  18723985 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

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Target: scaffold0277 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4585 - 4529
Alignment:
Q  1 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccat 57  Q
    |||||||| | ||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  4585 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

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Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13527 - 13490
Alignment:
Q  20 tggctctgagccaggctgctaacttgtccggctaccat 57  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  13527 tggctctgacccaagctgctaacttgtccggctaccat 13490  T

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Target: scaffold0419 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 7817 - 7854
Alignment:
Q  20 tggctctgagccaggctgctaacttgtccggctaccat 57  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  7817 tggctctgacccaagctgctaacttgtccggctaccat 7854  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 28127547 - 28127492
Alignment:
Q  34 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 92  Q
    |||||||||||||||||||||||| ||||   ||| |||||||| ||| ||||||||||    
T  28127547 gctgctaacttgtccggctaccattatag---tccagggtaccctactatacttaaatc 28127492  T

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