View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_43 (Length: 219)
Name: NF15523_high_43
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20876951 - 20876733
Alignment:
| Q |
1 |
tctaaatatgttcaaacatcaaccattttacattcaactaactcctaataagaatcaatctacaatcaattcattcaaaattaacttttaccgctctacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20876951 |
tctaaatatgttcaaacatcaaccattttacattcaactaactcctaataagaatcaatctacaatcaattcattcaaaattaacttttaccgctctacc |
20876852 |
T |
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| Q |
101 |
accaaacacacgttgaacccctgatccagggtcctgacaatgccaccgatgaggttagaaattaacattacgtaacaaacttttcgataaatacttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20876851 |
accaaacacacgttgaacccctgatccagggtgctgacaatgccaccgatgaggttagaaattaacattacgtaacaaacttttcgataaatacttgcaa |
20876752 |
T |
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| Q |
201 |
ccaacaattaacaatatac |
219 |
Q |
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||||||||||||||||||| |
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| T |
20876751 |
ccaacaattaacaatatac |
20876733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 14205534 - 14205681
Alignment:
| Q |
1 |
tctaaatatgttcaaacatcaaccattttacattcaactaactcctaataagaatcaat---ctacaatcaattcattcaaaattaacttttaccgctct |
97 |
Q |
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||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||| |||| || | || |
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| T |
14205534 |
tctaaatatattcaaacataaaatattttacattcaactaacttctaataagaatcaattacataaaatcaattcattcaaaa-taatttttgccaccct |
14205632 |
T |
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| Q |
98 |
accaccaaacacacgttgaacccctgatccagggtcctgacaatgccac |
146 |
Q |
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| T |
14205633 |
agcaccaaacacacgttgaacccctcttccagggtcttggcaacgccac |
14205681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7206852 - 7206984
Alignment:
| Q |
1 |
tctaaatatgttcaaacatcaaccattttacattcaactaactcctaataagaatcaatctac----aatcaattcattcaaaattaacttttaccgctc |
96 |
Q |
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||||||||| || ||| || ||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||| |||| |||| |
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| T |
7206852 |
tctaaatatatttaaatataaaccattttacattcaactaacttctaataagaaccaat-tacacaaaatcaattcattcaaaattaatttttgccgccg |
7206950 |
T |
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| Q |
97 |
taccaccaaacacacgttgaacccctgatccagggtc |
133 |
Q |
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|| |||||| ||||||| |||||||||||||||| |
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| T |
7206951 |
tagcaccaagcacacgt---ccccctgatccagggtc |
7206984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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