View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_high_6 (Length: 563)

Name: NF15523_high_6
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_high_6
NF15523_high_6
[»] chr2 (8 HSPs)
chr2 (35-550)||(41602398-41602923)
chr2 (35-343)||(25302758-25303066)
chr2 (35-195)||(25306753-25306914)
chr2 (186-343)||(45033461-45033617)
chr2 (92-343)||(1015727-1015978)
chr2 (1-74)||(29758145-29758219)
chr2 (92-130)||(17308693-17308731)
chr2 (4-44)||(20516116-20516156)
[»] chr1 (13 HSPs)
chr1 (18-195)||(33773132-33773310)
chr1 (1-88)||(902102-902189)
chr1 (1-74)||(3282826-3282900)
chr1 (1-74)||(3284527-3284601)
chr1 (1-74)||(9312054-9312128)
chr1 (1-74)||(9310437-9310511)
chr1 (1-74)||(16808711-16808785)
chr1 (1-74)||(17449336-17449410)
chr1 (1-66)||(37664695-37664761)
chr1 (1-66)||(37674417-37674483)
chr1 (92-137)||(44782242-44782287)
chr1 (1-66)||(37702211-37702277)
chr1 (91-137)||(46679707-46679753)
[»] chr3 (11 HSPs)
chr3 (35-195)||(35244113-35244274)
chr3 (35-195)||(35243847-35244000)
chr3 (186-343)||(27682292-27682451)
chr3 (18-137)||(41874441-41874561)
chr3 (2-70)||(6789646-6789715)
chr3 (269-343)||(4607612-4607686)
chr3 (115-195)||(27972620-27972701)
chr3 (1-74)||(17402914-17402989)
chr3 (202-252)||(4607569-4607619)
chr3 (27-74)||(1140052-1140100)
chr3 (353-394)||(27682473-27682514)
[»] chr4 (16 HSPs)
chr4 (15-195)||(8005832-8006013)
chr4 (5-100)||(24807453-24807548)
chr4 (1-86)||(52545222-52545307)
chr4 (202-394)||(11811126-11811330)
chr4 (15-100)||(51295202-51295287)
chr4 (202-394)||(25052943-25053147)
chr4 (2-74)||(54296454-54296527)
chr4 (1-74)||(3529279-3529353)
chr4 (1-74)||(7040386-7040460)
chr4 (1-74)||(23564807-23564881)
chr4 (1-74)||(23985799-23985873)
chr4 (1-74)||(52518784-52518858)
chr4 (1-74)||(52520626-52520700)
chr4 (1-70)||(18656133-18656203)
chr4 (1-74)||(23566481-23566555)
chr4 (18-100)||(6732668-6732747)
[»] chr8 (17 HSPs)
chr8 (76-195)||(44687138-44687258)
chr8 (202-536)||(35674484-35674831)
chr8 (1-74)||(30224255-30224329)
chr8 (1-71)||(3375558-3375629)
chr8 (1-74)||(6428765-6428839)
chr8 (1-63)||(14935602-14935664)
chr8 (1-74)||(25249031-25249105)
chr8 (4-67)||(36535971-36536035)
chr8 (187-285)||(13856801-13856901)
chr8 (1-70)||(5567451-5567521)
chr8 (353-442)||(13856981-13857070)
chr8 (92-138)||(1173514-1173560)
chr8 (92-137)||(30634288-30634333)
chr8 (229-394)||(1173608-1173785)
chr8 (1-63)||(3379257-3379320)
chr8 (1-72)||(31032137-31032205)
chr8 (5-46)||(29274808-29274849)
[»] chr7 (9 HSPs)
chr7 (18-193)||(30511088-30511264)
chr7 (31-100)||(34844107-34844177)
chr7 (1-74)||(37405582-37405656)
chr7 (1-74)||(28124720-28124794)
chr7 (1-74)||(28126547-28126621)
chr7 (92-292)||(29924636-29924839)
chr7 (1-74)||(4895609-4895683)
chr7 (1-74)||(44963188-44963262)
chr7 (1-74)||(20046628-20046703)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-88)||(39170-39257)
[»] chr6 (16 HSPs)
chr6 (5-88)||(14611113-14611196)
chr6 (25-88)||(14618973-14619036)
chr6 (1-59)||(32079935-32079993)
chr6 (1-74)||(33866124-33866198)
chr6 (1-74)||(15868417-15868491)
chr6 (1-74)||(33869271-33869345)
chr6 (35-85)||(14620560-14620610)
chr6 (1-74)||(5376902-5376977)
chr6 (1-74)||(5378757-5378832)
chr6 (5-74)||(1088785-1088855)
chr6 (1-74)||(15866605-15866679)
chr6 (3-74)||(9415095-9415167)
chr6 (92-137)||(34350393-34350438)
chr6 (1-71)||(15149180-15149251)
chr6 (1-74)||(19645432-19645506)
chr6 (59-100)||(32080021-32080062)
[»] chr5 (8 HSPs)
chr5 (202-322)||(10410914-10411037)
chr5 (64-137)||(8081480-8081553)
chr5 (1-74)||(39787191-39787265)
chr5 (92-253)||(40382700-40382861)
chr5 (202-343)||(25503393-25503537)
chr5 (35-68)||(8080966-8080999)
chr5 (92-137)||(25502084-25502129)
chr5 (92-137)||(25725867-25725912)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-74)||(6251-6325)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-74)||(58811-58885)


Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 35 - 550
Target Start/End: Original strand, 41602398 - 41602923
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagca 134  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41602398 agagttagttacataactaaattctatatataggaacactcatgtatcatttcaaccaccttttatacaattgtttcttagtgatgactcctagagagca 41602497  T
Q  135 ttatccttt-tatctttccattgtatgggaccttgatactcggcatcctctaattcataatatggtattcagagcgctatggagatagcgatttcgatcc 233  Q
    |||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41602498 ttatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcataatatggtat-cagagcgctatggagatagcgatttcgatcc 41602596  T
Q  234 agattctgatgacgaagatggtcccgatggtgacaaagaagatcttgaagctttcgcattagaaaattcttgttcttccacttcgcaagtttcgatcgtt 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41602597 agattctgatgacgaagatggtcccgatggtgacgaagaagatcttgaagcttccgcattagaaaattcttgttcttccgcttcgcaagtttcgatcgtt 41602696  T
Q  334 ttcggcag---------ttcagtttccactcctccttcaccatggattgctctagccattgatggattcagcttcacggttggtgacattccttgttttc 424  Q
    ||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41602697 ttcggcagtttcggcgattcagtttccactccttcttcaccatggattgctctagccattgatggattcagcttcacggttggtgacattccttgttttc 41602796  T
Q  425 ttgatgattcgagttgcaccatcgcacctctacgtttgctgcttcagacg-aatccagaaaacacaaattcttgatttgaagttcaccgtttatgcaaaa 523  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  41602797 ttgatgattcgagttgcaccatcgcacctctatgtttgctgcttcagacgaaatccagaaaacacaaattcttgatttgaagttcaccgtttctgccaaa 41602896  T
Q  524 tccgtgaaatcgacacattgcgactct 550  Q
    |||| ||||||||||||||||||||||    
T  41602897 tccgcgaaatcgacacattgcgactct 41602923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 343
Target Start/End: Original strand, 25302758 - 25303066
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagca 134  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25302758 agagttagttacacaactaaactctatatataggatcactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatgactcctagagagca 25302857  T
Q  135 ttatccttt-tatctttccattgtatgggaccttgatactcggcatcctctaattcataatatggtattcagagcgctatggagatagcgatttcgatcc 233  Q
    |||| | || |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  25302858 ttatgcattctatctttccattatatgggaccttgatactcgacatcctctaattcatagtatggtat-cagagtgctatggagatagcgatttcgatcc 25302956  T
Q  234 agattctgatgacgaagatggtcccgatggtgacaaagaagatcttgaagctttcgcattagaaaattcttgttcttccacttcgcaagtttcgatcgtt 333  Q
    | ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  25302957 aaattctgatgacaaagatggtcccgatggtgacgaagaagatcttgaagcttccgcatcagaaaattcttgttcttccgcttcgcaagtttcgatcgtt 25303056  T
Q  334 ttcggcagtt 343  Q
    || |||||||    
T  25303057 tttggcagtt 25303066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 25306753 - 25306914
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagca 134  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  25306753 agagttagttacacagctaaactctatatataggaacactcatgtaacatttcaatcatcttttatacaattgtttcttagtgatgactcatagagagca 25306852  T
Q  135 ttat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25306853 ttatgcattctatctttccattgtatgggaccttgatactcggcatcctctaattcataata 25306914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 45033461 - 45033617
Alignment:
Q  186 attcataatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtgacaaagaagatcttgaagct 285  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| | | ||||||||| |||||||||||||||||    
T  45033461 attcataacatggtat-cagagcgctatggagatagcgattttgatccagtttctgatgacgaagatgattctgatggtgacgaagaagatcttgaagct 45033559  T
Q  286 ttcgcattagaaaattcttgttcttccacttcgcaagtttcgatcgttttcggcagtt 343  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  45033560 tccgcattagaaaattcttgttcttccgcttcgcaagtttcgatcgttttcggtagtt 45033617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 92 - 343
Target Start/End: Original strand, 1015727 - 1015978
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcattatccttt-tatctttccattgtatgggaccttgatactcggcatcctctaattca 190  Q
    |||||||||||||||||||||| || | |||||| |||||| ||||  |  | ||||||||||||| ||  || || ||  |  || ||||| | |||||    
T  1015727 atcttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 1015826  T
Q  191 taatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtgacaaagaagatcttgaagctttcgc 290  Q
    ||| ||||||| |||| ||||||||| ||||| |||| ||||||| || |||||| ||||||| | ||||||||||  |||||||||||||||||| |||    
T  1015827 taacatggtat-cagatcgctatggaaatagccattttgatccagtttttgatgaagaagatgattccgatggtgatgaagaagatcttgaagcttccgc 1015925  T
Q  291 attagaaaattcttgttcttccacttcgcaagtttcgatcgttttcggcagtt 343  Q
    || |||||||||||||||||   ||||||||||||||||||||||||||||||    
T  1015926 atcagaaaattcttgttcttttgcttcgcaagtttcgatcgttttcggcagtt 1015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29758145 - 29758219
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  29758145 aaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 29758219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 17308693 - 17308731
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagag 130  Q
    |||||||||||||||||||||| || |||||||||||||    
T  17308693 atcttttatacaattgtttcttggtaatgactcctagag 17308731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 20516156 - 20516116
Alignment:
Q  4 ctagagttagtagcttggttaagagttagttagagttagtt 44  Q
    |||| ||||||||||||||||| || |||||||||||||||    
T  20516156 ctagggttagtagcttggttaaaagatagttagagttagtt 20516116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 33773132 - 33773310
Alignment:
Q  18 ttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtg 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||    
T  33773132 ttggttaagagttagttagagttagttacacgactaaactctatatataagaacactcatgtatcatttccatcatcttttatacaattgttttttagtg 33773231  T
Q  118 atgactcctagagagcattat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    ||||||||||||||| ||||| | || ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  33773232 atgactcctagagagtattatgcattctatctttccatcgtatgggaccttgatactcgacatcctctaattcataata 33773310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 902102 - 902189
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttca 88  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  902102 aaactagagttagtagcttggttagaagttagttagagttagttacacaattaaactctctatataggaacactcatgtatcatttca 902189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3282826 - 3282900
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  3282826 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 3282900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3284527 - 3284601
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  3284527 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 3284601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9312054 - 9312128
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  9312054 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 9312128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9310437 - 9310511
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | || |||  ||||||||||||||||||    
T  9310437 aaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatctatatataggaacact 9310511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16808785 - 16808711
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| ||||||||||| |||||||    
T  16808785 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatatatgaacact 16808711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17449336 - 17449410
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||| ||||||||||| ||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  17449336 aaactagggttagtagcttcgttagaagttagttagagttagttactcaaactaatctctatatataggaacact 17449410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37664761 - 37664695
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatata 66  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  | |||||| |||||||||||    
T  37664761 aaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37674483 - 37674417
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatata 66  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  | |||||| |||||||||||    
T  37674483 aaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 44782287 - 44782242
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  44782287 atcttttatacaattgtttcttagtaatgactcctagagagaatta 44782242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37702211 - 37702277
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatata 66  Q
    ||||||||||||||||||||||||  | |||||||||||||||||  | |||||| |||||||||||    
T  37702211 aaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatctctatatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 46679707 - 46679753
Alignment:
Q  91 catcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||||    
T  46679707 catcttttatacaattgtttcttggtaatgactcctagagagaatta 46679753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 35244113 - 35244274
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagca 134  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  35244113 agagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatataattttttcttagtgatgactcctagagagca 35244212  T
Q  135 ttat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    |||| | || |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  35244213 ttatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcataata 35244274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 35244000 - 35243847
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagca 134  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||      ||||||| ||||||||||||    
T  35244000 agagttaattacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgt------gtgatgattcctagagagca 35243907  T
Q  135 ttat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    |||| | || |||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  35243906 ttatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcataata 35243847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 27682292 - 27682451
Alignment:
Q  186 attcataatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtgacaaaga---agatcttgaa 282  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||| | ||||||||||  ||||   ||||||| ||    
T  27682292 attcataacatggtat-cagagcgctatggagatagcgattttgatccagtttctgaggacgaagatgattccgatggtgatgaagaagaagatcttaaa 27682390  T
Q  283 gctttcgcattagaaaattcttgttcttccacttcgcaagtttcgatcgttttcggcagtt 343  Q
    |||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  27682391 gcttccgcatcagaaaattcttgttctttcgcttcgcaagtttcgatcgttttcggcagtt 27682451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 41874441 - 41874561
Alignment:
Q  18 ttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatc-ttttatacaattgtttcttagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||| ||||||||||||||||||| ||    
T  41874441 ttggttaagagttagttagagttagttacacaactaaactctatatataggaacactcatgtaccatttcaattatctttttatacaattgtttcttggt 41874540  T
Q  117 gatgactcctagagagcatta 137  Q
     ||||||||||||||| ||||    
T  41874541 aatgactcctagagagaatta 41874561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 6789646 - 6789715
Alignment:
Q  2 aactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaa 70  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||    
T  6789646 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaa 6789715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 4607612 - 4607686
Alignment:
Q  269 aagaagatcttgaagctttcgcattagaaaattcttgttcttccacttcgcaagtttcgatcgttttcggcagtt 343  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||| |||| ||| || |||||||||||||    
T  4607612 aagaagatcttgaagcttccgcatcagaaaattcttgttcttctgcttcacaagcttcaattgttttcggcagtt 4607686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 27972620 - 27972701
Alignment:
Q  115 gtgatgactcctagagagcattatccttt-tatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    ||||||||||||| ||| |||||| | || ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||    
T  27972620 gtgatgactcctaaagatcattatgcattctatcttttcattgtatgggaccttgatattcggtatcctctgattcataata 27972701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17402989 - 17402914
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactc-tatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| ||| ||||||||||||||||    
T  17402989 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacact 17402914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 4607569 - 4607619
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagat 252  Q
    |||||||||||||||||||||||||| ||||||| || |||||| ||||||    
T  4607569 tcagagcgctatggagatagcgattttgatccagtttttgatgaagaagat 4607619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 1140052 - 1140100
Alignment:
Q  27 agttagttagagttagttacacaa-ctaaactctatatataggaacact 74  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  1140052 agttagttagagttagttactcaaactaatctctatatataggaacact 1140100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 27682473 - 27682514
Alignment:
Q  353 ctcctccttcaccatggattgctctagccattgatggattca 394  Q
    |||||||||||||||||||||||| | || ||||||||||||    
T  27682473 ctcctccttcaccatggattgctccaaccgttgatggattca 27682514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 8005832 - 8006013
Alignment:
Q  15 agcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttctta 114  Q
    ||||||||||||  ||||||||| ||||||||  |||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||     
T  8005832 agcttggttaaggattagttagaattagttacttaactaatctctatatataggaacactcatgtatcatttcaatcatcttttattcaattgtttcttt 8005931  T
Q  115 gtgatgactcctagagagcattat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataata 195  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  8005932 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgacactcggcatcctctgattcataata 8006013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 24807453 - 24807548
Alignment:
Q  5 tagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttat 100  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  24807453 tagagttagaagcttggttaagagttaggaagagttagttacacaactaaaatctatatataggaacactcatgtatcatttcaatcatcttttat 24807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 52545307 - 52545222
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcattt 86  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52545307 aaactagagttagtagcttggttagaagttggttagagttagttacacaactaaactctatatataggaacactcatgtatcattt 52545222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 202 - 394
Target Start/End: Complemental strand, 11811330 - 11811126
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatgg---tgacaaagaagatcttgaagctttcgcattagaaa 298  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||| ||||||| | |||||||   |||  |||||||||||||||||| ||||| |||||    
T  11811330 tcagagcgctgtggagatagcgattttgatccagtttctgatgaagaagatgattccgatggtgatgaagaagaagatcttgaagcttccgcatcagaaa 11811231  T
Q  299 attcttgttcttccacttcgcaag-------tttcgatcgttttcggcagttcagttt---ccactcctccttcaccatggattgctctagccattgatg 388  Q
    |||| ||||||||| |||||||||       ||||| | ||||| ||| |||||||||   ||||| |||||||||| |||||||||| | || ||||||    
T  11811230 attcatgttcttccgcttcgcaagaattcgttttcggtagtttt-ggcggttcagtttccaccactgctccttcaccgtggattgctccaaccgttgatg 11811132  T
Q  389 gattca 394  Q
    ||||||    
T  11811131 gattca 11811126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 51295202 - 51295287
Alignment:
Q  15 agcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||| || | |||||||    
T  51295202 agcttggttaagagttagttagagttagttacacaactaaacattatatataggaacactaatgcatcatttctactaccttttat 51295287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 394
Target Start/End: Original strand, 25052943 - 25053147
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtgacaaagaa---gatcttgaagctttcgcattagaaa 298  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| | | || |||||  |||||   ||||||||||||| | ||| |||||    
T  25052943 tcagagcgctatggagatagcgattttgatccagtttctgatgacgaagatgattctgaaggtgatgaagaagatgatcttgaagcttccacatcagaaa 25053042  T
Q  299 attcttgttcttccacttcgcaag-------tttcgatcgttttcggcagttcagttt---ccactcctccttcaccatggattgctctagccattgatg 388  Q
     ||| ||||||||| |||||||||       ||||| | ||||| ||| |||||||||   ||||| |||||||||| |||||||||| | || ||||||    
T  25053043 tttcgtgttcttccgcttcgcaagaattcattttcggtagtttt-ggcggttcagtttccaccactgctccttcaccgtggattgctccaaccgttgatg 25053141  T
Q  389 gattca 394  Q
    ||||||    
T  25053142 gattca 25053147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 54296454 - 54296527
Alignment:
Q  2 aactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 54296527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3529353 - 3529279
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||| |||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  3529353 aaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 3529279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7040386 - 7040460
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  7040386 aaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 7040460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23564881 - 23564807
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  23564881 aaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 23564807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23985799 - 23985873
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  | |||||| |||||||||||||||||||    
T  23985799 aaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatataggaacact 23985873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52518784 - 52518858
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  52518784 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 52518858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52520626 - 52520700
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  52520626 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 52520700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18656133 - 18656203
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaa 70  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||| | |||||| |||||||||||||||    
T  18656133 aaactagagttagtagcttagttagaagttagttagagttagttactcaaactaatctctatatataggaa 18656203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23566555 - 23566481
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||| |||||||||||||||  |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  23566555 aaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 23566481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 6732747 - 6732668
Alignment:
Q  18 ttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttat 100  Q
    ||||||||||||||||| ||||||||    ||| ||| ||||||||||||||||||| ||||||| |||| || |||||||||    
T  6732747 ttggttaagagttagttggagttagtc---caattaatctctatatataggaacactcatgtatcttttctactatcttttat 6732668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 44687138 - 44687258
Alignment:
Q  76 atgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagcattat-ccttttatctttccattgtatgggaccttgatactc 174  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||||||||||||||||    
T  44687138 atgtatcatttcaatcatcttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactc 44687237  T
Q  175 ggcatcctctaattcataata 195  Q
    |||||||||| ||||||||||    
T  44687238 ggcatcctctgattcataata 44687258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 202 - 536
Target Start/End: Complemental strand, 35674831 - 35674484
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtga---caaagaagatcttgaagctttcgcattagaaa 298  Q
    |||||||||| || |||||||||||| ||||||| |||||||||  |||||| | |  |||||||   | |||||||||||||||||| ||||| || ||    
T  35674831 tcagagcgctgtgaagatagcgattttgatccagtttctgatgaaaaagatgattctaatggtgatgactaagaagatcttgaagcttccgcatcagcaa 35674732  T
Q  299 attcttgttcttccacttcgcaagtttcgatcgttttcg--------gcagttcagtttccactcctccttcaccatggattgctctagccattgatgga 390  Q
     ||| ||||||||| |||||||||| ||  |||||||||        ||  |||  |||||||||||| ||||||||||||||||| |||||||||||||    
T  35674731 cttcatgttcttccgcttcgcaagtctcattcgttttcgtagttttggcgattctatttccactcctctttcaccatggattgctccagccattgatgga 35674632  T
Q  391 ttcagcttcacggttggtgacattccttgttttcttgatgattcgagttgca-ccatcgcacctctacgtttgctgcttc-agacgaatccagaaaacac 488  Q
    ||||||||||| ||||| ||||||| || |||||||||||||| |||||||| ||||| ||||||| | || | || ||| | | | ||| |||||||||    
T  35674631 ttcagcttcacagttggcgacattctttattttcttgatgatttgagttgcagccatcacacctctgctttcgatgattcaaaaggcatcaagaaaacac 35674532  T
Q  489 aaattcttgatttgaagttcaccgtttatgcaaaatccgtgaaatcga 536  Q
    | ||| |||||| |||||| | ||||| ||| |||||| |||| ||||    
T  35674531 atattattgattcgaagttgatcgtttctgccaaatccatgaattcga 35674484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30224255 - 30224329
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  30224255 aaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 30224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3375629 - 3375558
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaac 71  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||| | |||||| ||||||||||||||||    
T  3375629 aaactagggttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaac 3375558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6428765 - 6428839
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||| ||| ||||| |||||||||||| ||||||| | |||||| |||||||||||||||||||    
T  6428765 aaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaatctctatatataggaacact 6428839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14935602 - 14935664
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatat 63  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||| |||||||||||||||||    
T  14935602 aaactagagttagtaacttggttagaagttagttagaattagttatacaactaaactctatat 14935664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25249031 - 25249105
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  ||||||||| || ||||||| | |||||| |||||||||||||||||||    
T  25249031 aaactagagttagtagcttggttagaagttagttaaaggtagttactcaaactaatctctatatataggaacact 25249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 36536035 - 36535971
Alignment:
Q  4 ctagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatatag 67  Q
    |||||||||||||||||||||  |||||||||||||||||||| | |||||| ||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatag 36535971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 13856801 - 13856901
Alignment:
Q  187 ttcataatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatgg---tgacaaagaagatcttgaag 283  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||| |||| ||||||| |   |||||   |||| |||||||||||||||    
T  13856801 ttcataacatggtat-cagagcgctatggagatagcgattttgatccagtttctaatgaagaagatgattatgatggtgatgacgaagaagatcttgaag 13856899  T
Q  284 ct 285  Q
    ||    
T  13856900 ct 13856901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5567451 - 5567521
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaa 70  Q
    ||||||||||||||||||| ||||  |||||||| ||||||||||| | |||||| |||||||||||||||    
T  5567451 aaactagagttagtagcttagttagaagttagttggagttagttactcaaactaatctctatatataggaa 5567521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 13856981 - 13857070
Alignment:
Q  353 ctcctccttcaccatggattgctctagccattgatggattcagcttcacggttggtgacattccttgttttcttgatgattcgagttgca 442  Q
    ||||||||||||||||||| || | || |||||| ||||||| | ||| ||| |||||||| ||| ||||||| ||||||||| ||||||    
T  13856981 ctcctccttcaccatggatcgcaccagtcattgaaggattcaccatcaaggtcggtgacatccctagttttctggatgattcgtgttgca 13857070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 1173514 - 1173560
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcattat 138  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||    
T  1173514 atcttttatacaattgtttcttggtaatgactcctagagagaattat 1173560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 30634333 - 30634288
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  30634333 atcttttatacaattgtttcttagtaatgactcatagagagaatta 30634288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 394
Target Start/End: Original strand, 1173608 - 1173785
Alignment:
Q  229 gatccagattctgatgacgaagatggtcccgatggtgacaaaga---agatcttgaagctttcgcattagaaaattcttgttcttccacttcgcaag--- 322  Q
    ||||||| || |||||| ||||||| | ||||||||||  ||||   ||||||||||||||  |||| ||||||||| ||||||||  |||||||||       
T  1173608 gatccagtttttgatgaagaagatgattccgatggtgatgaagaagaagatcttgaagcttcagcatcagaaaattcatgttcttctgcttcgcaagaat 1173707  T
Q  323 ----tttcgatcgttttcggcagttcagttt---ccactcctccttcaccatggattgctctagccattgatggattca 394  Q
        ||||| | ||||| ||| |||||||||   ||||| |||||||||| |||||||||| | || ||||||||||||    
T  1173708 tcattttcggttgtttt-ggcggttcagtttccaccactgctccttcaccgtggattgctccaaccgttgatggattca 1173785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3379320 - 3379257
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatat 63  Q
    |||||||||||||||| || ||||  |||||||||||||||||||| | |||||| ||||||||    
T  3379320 aaactagagttagtagtttagttagaagttagttagagttagttactcaaactaatctctatat 3379257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31032205 - 31032137
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaa-ctaaactctatatataggaaca 72  Q
    ||||||| |||||||||||||||| ||   |||||||||||||||| ||| |||| |||||||||||||||||    
T  31032205 aaactagggttagtagcttggtta-ga---agttagagttagttactcaaactaatctctatatataggaaca 31032137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29274849 - 29274808
Alignment:
Q  5 tagagttagtagcttggttaagagttagttagagttagttac 46  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  29274849 tagagttagtagcttggttacgggttagttagagttaattac 29274808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 30511088 - 30511264
Alignment:
Q  18 ttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtg 117  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||  ||||| |||||    |||||||||||||||||||||||| ||    
T  30511088 ttggttaagagtttgttagagttagttattcaactaaactctatatatagggacacccatgtaccatttatctcatcttttatacaattgtttcttactg 30511187  T
Q  118 atgactcctagagagcattat-ccttttatctttccattgtatgggaccttgatactcggcatcctctaattcataa 193  Q
    || ||||||||||| |||||| | || ||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  30511188 ataactcctagagaacattatgcattctatcttttcattgtataggaccttgatactcggcatcctctgattcataa 30511264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 34844107 - 34844177
Alignment:
Q  31 agttagagttagttacacaactaaactctatatataggaacacttatgtatcatttcaa-ccatcttttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  34844107 agttagagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatccatcttttat 34844177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37405656 - 37405582
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  37405656 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 37405582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28124794 - 28124720
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  28124794 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 28124720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28126621 - 28126547
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  28126621 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 28126547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 29924636 - 29924839
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcattatccttt-tatctttccattgtatgggaccttgatactc-ggcatcctctaattc 189  Q
    |||||||||| |||||||| ||||| ||||||||||||||| ||||  |  | ||||||||||||| ||  ||||| || |||  || ||||| | |||     
T  29924636 atcttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctaga-actatggaatcctttgatta 29924734  T
Q  190 ataatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatgg---tgacaaagaagatcttgaagctt 286  Q
    |||| ||||||| ||||||||||||||||||||||||| ||| ||| || |||||| ||||||| | | |||||   |||  ||||||||||||||||||    
T  29924735 ataacatggtat-cagagcgctatggagatagcgattttgattcagtttatgatgaagaagatgattctgatggtgatgaagaagaagatcttgaagctt 29924833  T
Q  287 tcgcat 292  Q
     |||||    
T  29924834 ccgcat 29924839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4895609 - 4895683
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||||||| |||||||  ||||||||||||||| |||| | |||||| |||||||||||||||||||    
T  4895609 aaactagagttagtagtttggttagaagttagttagagttatttactcaaactaatctctatatataggaacact 4895683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44963188 - 44963262
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||| | || ||| |||||||||||||||||||    
T  44963188 aaactagggttagtagcttggttagaagttagttagagttagttactcaaattaatctctatatataggaacact 44963262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20046703 - 20046628
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactc-tatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| ||| ||||||||||||||||    
T  20046703 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacact 20046628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39170 - 39257
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttca 88  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39170 aaactagagttagtagcttggttagaagttagttaaagttagttacacaactaaactctatatataggaacactcatgtatcatttca 39257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 14611113 - 14611196
Alignment:
Q  5 tagagttagtagcttggttaagagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttca 88  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  14611113 tagagttagtagcttcgttaagagttatttagagttagttacacaactaaactctatatataggaacactcgtgtatcatttca 14611196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 14618973 - 14619036
Alignment:
Q  25 agagttagttagagttagttacacaactaaactctatatataggaacacttatgtatcatttca 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14618973 agagttagttagagttagttacacaactaaactctatatataggaacactcatgtatcatttca 14619036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32079935 - 32079993
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacacaactaaactct 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32079935 aaactagagttagaagcttggttaagagttagttagagttagttacacaactaaactct 32079993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33866124 - 33866198
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacaca-actaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| || ||||| |||||||||||||||||||    
T  33866124 aaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctctatatataggaacact 33866198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15868417 - 15868491
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||| |||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  15868417 aaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 15868491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33869271 - 33869345
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttac-acaactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||   |||||| |||||||||||||||||||    
T  33869271 aaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctctatatataggaacact 33869345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 14620560 - 14620610
Alignment:
Q  35 agagttagttacacaactaaactctatatataggaacacttatgtatcatt 85  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  14620560 agagttagttacacaactaaactctatatataggaaaactcatgtatcatt 14620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5376902 - 5376977
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactc-tatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| ||| ||||||||||||||||    
T  5376902 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacact 5376977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5378757 - 5378832
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactc-tatatataggaacact 74  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| | |||||| ||| ||||||||||||||||    
T  5378757 aaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacact 5378832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 1088855 - 1088785
Alignment:
Q  5 tagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||| ||||  |||||||||||||||||||  | |||||| |||||||||||||||||||    
T  1088855 tagagttagtagctttgttagaagttagttagagttagttagtcaaactaatctctatatataggaacact 1088785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15866605 - 15866679
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||||||||| |||||||| ||  |||||||||||||||||||| | |||||| |||||||| ||||||||||    
T  15866605 aaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctctatatttaggaacact 15866679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 9415095 - 9415167
Alignment:
Q  3 actagagttagtagcttggttaagagttagttagagttagtta-cacaactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||  |||||||||||||||||||    |||||| ||||||||||| |||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatctctatatataagaacact 9415167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 34350438 - 34350393
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||    
T  34350438 atcttttatacaattgtttcttagtaatgactcctaaagagaatta 34350393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15149251 - 15149180
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaac 71  Q
    ||||||| || |||||||||||||  |||||||||||||||||||| | || |||  |||||||||||||||    
T  15149251 aaactagggtcagtagcttggttagaagttagttagagttagttactcaaattaatttctatatataggaac 15149180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19645506 - 19645432
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    |||||| |||||||||||||||||  | ||||| |||| ||||||| | |||||| ||||||||||| |||||||    
T  19645506 aaactaaagttagtagcttggttagaaattagtcagaggtagttactcaaactaatctctatatataagaacact 19645432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 32080021 - 32080062
Alignment:
Q  59 tatatataggaacacttatgtatcatttcaaccatcttttat 100  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  32080021 tatatataggaacactcgtgtatcatttcaatcatcttttat 32080062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 10410914 - 10411037
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatggtgacaaagaa---gatcttgaagctttcgcattagaaa 298  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||  |||||   ||||| ||||||| ||||| |||||    
T  10410914 tcagagcgctatggagatagcgattttgatccagtttctgatgacgaagatgattccgatggtgatgaagaagatgatctcgaagcttccgcatcagaaa 10411013  T
Q  299 attcttgttcttccacttcgcaag 322  Q
     ||| ||||||||| |||||||||    
T  10411014 tttcatgttcttccgcttcgcaag 10411037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 8081480 - 8081553
Alignment:
Q  64 ataggaacacttatgtatcatttcaaccatcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8081480 ataggaacacccatgtatcatttcaatcatcttttatacaattgtttcttagtaatgactcctagagagaatta 8081553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39787265 - 39787191
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  39787265 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 39787191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 92 - 253
Target Start/End: Complemental strand, 40382861 - 40382700
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcattatcct-tttatctttccattgtatgggaccttgatactcggcatcctctaattca 190  Q
    ||||||| ||||||||||||||||| |||| |||||||||| ||||  |  ||||||||||||||| ||  ||||| ||     |  ||||| | |||||    
T  40382861 atcttttttacaattgtttcttagtaatgattcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattca 40382762  T
Q  191 taatatggtattcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatg 253  Q
    ||  ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  40382761 tatcatggtat-cagagcgctatggagatagcgattttgatccagtttctgatgacgaagatg 40382700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 25503537 - 25503393
Alignment:
Q  202 tcagagcgctatggagatagcgatttcgatccagattctgatgacgaagatggtcccgatgg---tgacaaagaagatcttgaagctttcgcattagaaa 298  Q
    |||||||||||||||||||||||||| ||||||| |||||| || ||||||| | | |||||   |||  |||||||||||||||||| ||||| || ||    
T  25503537 tcagagcgctatggagatagcgattttgatccagtttctgaagaagaagatgattctgatggtgatgaagaagaagatcttgaagcttccgcatcagcaa 25503438  T
Q  299 attcttgttcttccacttcgcaagtttcgatcgttttcggcagtt 343  Q
      ||  |||||||  |||||||||||||  | |||||||| ||||    
T  25503437 cctcgagttcttcagcttcgcaagtttcagttgttttcggaagtt 25503393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 8080966 - 8080999
Alignment:
Q  35 agagttagttacacaactaaactctatatatagg 68  Q
    ||||||||||||||||||||||||| ||||||||    
T  8080966 agagttagttacacaactaaactctctatatagg 8080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 25502129 - 25502084
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||||||||||||||  | ||||||||||||||| ||||    
T  25502129 atcttttatacaattgtttcttgataatgactcctagagagaatta 25502084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 25725912 - 25725867
Alignment:
Q  92 atcttttatacaattgtttcttagtgatgactcctagagagcatta 137  Q
    ||||||||||| |||||||||| || ||||||||||||||| ||||    
T  25725912 atcttttatacgattgtttcttggtaatgactcctagagagaatta 25725867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6251 - 6325
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  6251 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 6325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 58811 - 58885
Alignment:
Q  1 aaactagagttagtagcttggttaagagttagttagagttagttacac-aactaaactctatatataggaacact 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  58811 aaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacact 58885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University