View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_high_7 (Length: 546)
Name: NF15523_high_7
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 49133649 - 49133128
Alignment:
| Q |
1 |
gcaagtactatcaatcgactgatcaaaataacctatattgattgagcaatgtatatatgcatctttaatttttgtggtggaagtatcaacgcatctttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49133649 |
gcaagtactatcaatcgactgatcaaaataacctatattgattgagcaatgtatatatgcatctttaatttttgtggtggaagtatcaacgcatctttct |
49133550 |
T |
|
| Q |
101 |
atatacaagtggtactactgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccccatgaactnnnnnnnnnttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49133549 |
atatacaagtggtactactgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccccatgaactaaaaaaaaattat |
49133450 |
T |
|
| Q |
201 |
aaccttcacatgcaaaaggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaagatcagtttccataatcaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49133449 |
aaccttcacatgcaaaaggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaagatcagtttccataatcaataa |
49133350 |
T |
|
| Q |
301 |
tactgttgacacataacgtcagacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaaga |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49133349 |
tactgttgacacataacgtcacacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaaga |
49133250 |
T |
|
| Q |
401 |
acaatgataaaatgttacagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaacattctcaggcatgcctc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49133249 |
acaatgataaaatgttacagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaatattctcaggcatgcctt |
49133150 |
T |
|
| Q |
501 |
ttccttcatgatgaccaccatc |
522 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49133149 |
ttccttcatgatgaccaccatc |
49133128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University