View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_9 (Length: 520)
Name: NF15523_high_9
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 218 - 501
Target Start/End: Complemental strand, 3144501 - 3144218
Alignment:
| Q |
218 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
317 |
Q |
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| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
3144402 |
T |
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| Q |
318 |
cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
417 |
Q |
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| T |
3144401 |
cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
3144302 |
T |
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| Q |
418 |
tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgac |
501 |
Q |
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| T |
3144301 |
tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgac |
3144218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 3144710 - 3144550
Alignment:
| Q |
7 |
gagaagaacatgaaactaacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnnnnnnnnnnnc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3144710 |
gagaagaacatgaaactaacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtttctttttttc |
3144612 |
T |
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| Q |
107 |
ttgaaaaccaaacaaagaaagtagggtcacgtatgttgagaagtaagacagtgaaagaaagc |
168 |
Q |
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| T |
3144611 |
ttgaaaaccaaacaaagaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc |
3144550 |
T |
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