View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_10 (Length: 538)
Name: NF15523_low_10
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 5 - 524
Target Start/End: Original strand, 48674231 - 48674752
Alignment:
| Q |
5 |
cagtgccagtgtcgttgtagaagcattgcattaagaaagagaaaattcattatctctctcttaaattcaacagcttttagtgagttgtactgttgatgaa |
104 |
Q |
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| T |
48674231 |
cagtgcctgtgtcgttgtagaagcattgcattaagaaagagaaaattcattatctctctcttaa-ttcaacagcttttagtgaac---actgttgatgaa |
48674326 |
T |
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| Q |
105 |
aaaatggctgaagaagattacatgccacaaagaaaagagaaaatgctgagatttgttacca------------aagatgatgcttaagttctccaatata |
192 |
Q |
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| T |
48674327 |
aaaatggctgaagaagattacatgccacaaagaaaagagaaaatgctgagatttgttaccatgtatgttgacaaagatcatgcttaagttctccaatata |
48674426 |
T |
|
| Q |
193 |
cttacatttttcgcactcaacctttacacaaaaagagaagaaaacatgaaatgaaacctaatattcaagtttgtgactaattctattaacataacatgac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48674427 |
cttacatttttcgcactcaacctttacacaaaaagagaagaaaatatgaaatgaaacctaatattcaagtttgtgacta------ttaacataacatgac |
48674520 |
T |
|
| Q |
293 |
atgataacaaaaattgagcaacactatagccttaattaatattcaagtttatcatcccacattagaagcaaaacagtgcacctccacattatatacagtc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48674521 |
atgataacaaaaattgagcaacactatagccttaattaatattcaagtttatcatcccacattagaagcaaaacagtgcacctccacattatatacagtc |
48674620 |
T |
|
| Q |
393 |
tagttttctgctccctgaattgccttgaacaccgtcgcatcaatcgaggcttttctattctcattgataatgattgtctactcttgctatatatagatat |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48674621 |
tagttttctgctccctgaattgccttgaacaccgtcgcatcaatcgaggcttttctattctcattgataatgattgtctactcttgctatatatagatat |
48674720 |
T |
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| Q |
493 |
gatattatagctataactcttatagtataaaa |
524 |
Q |
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| T |
48674721 |
gatattatagctataactcttatagtataaaa |
48674752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 7568718 - 7568664
Alignment:
| Q |
371 |
cacctccacattatatacagtctagttttctgctccctgaattgccttgaacacc |
425 |
Q |
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||||||||||| ||||| | ||| |||||||||||||| ||||||||||| |||| |
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| T |
7568718 |
cacctccacatgatataaaatcttgttttctgctcccttaattgccttgaccacc |
7568664 |
T |
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