View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_12 (Length: 514)
Name: NF15523_low_12
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 5397180 - 5396683
Alignment:
| Q |
1 |
ccgcatgcattcaaaatgcaatgttcgattgttacagaccccatcgtctataatcttcagcaaatggctctccaaccattactctgaggatcctattttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5397180 |
ccgcatgcattcaaaatgcaatgttcgattgttacagaccccatcgtctataatcttcagcaaatggctctccaaccattactctgag------------ |
5397093 |
T |
|
| Q |
101 |
tcaactataaaagagtacatcccatgtcctccaaggtacaatcttctaactccaaaaattcaaaactcttggctctcatacagatttgagcgtctgagtg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5397092 |
tcaactataaaagagtacatcccatgtcctccaaggtacaatcttctaactccaaaaattcaaaactcttggctctcatacagatttgagcgtctgagtg |
5396993 |
T |
|
| Q |
201 |
cagttcttctgatcacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacct |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5396992 |
cagttcttctgatcacctccgatcaaataacttaagagacggtgtaaaaactatgtttgtcttaatatgaattatagtgcttgtgttttgtaattcacct |
5396893 |
T |
|
| Q |
301 |
gcttcaatggaaaccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataac |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
5396892 |
gcttcaatggaaaccttccggtggtggtgtgagcaatggtgacagcgggattgaaatgagcaccagagatatgacctatagaatagactaataccataac |
5396793 |
T |
|
| Q |
401 |
agcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaataat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5396792 |
agcaagtccccaaacaattgatattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagcagcacatccagcaaatatcaagaagaat |
5396693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 203 - 496
Target Start/End: Original strand, 5407794 - 5408081
Alignment:
| Q |
203 |
gttcttctgatcacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgc |
302 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5407794 |
gttcttctaaccacctccgctcaaataacttaagaga------gaaacttatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgc |
5407887 |
T |
|
| Q |
303 |
ttcaatggaaaccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacag |
402 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
5407888 |
ttcaatggaaaccttccggttgtagtgtgagcaatggtgaccgcgggattgaaatgggcaccagagatatgacctatagaatagactaataccataacaa |
5407987 |
T |
|
| Q |
403 |
caagtccccaaacaattgatattccaggaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
496 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
5407988 |
caagtccccaaacaattgcaattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagaaccacatccagcaaatatcaagaa |
5408081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 496
Target Start/End: Complemental strand, 5388754 - 5388588
Alignment:
| Q |
330 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccag |
429 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||| |
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|
| T |
5388754 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5388655 |
T |
|
| Q |
430 |
gaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
496 |
Q |
| |
|
|| |||| || ||||| || |||| ||| |||||||| ||||||||||| || |||||||||||||| |
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| T |
5388654 |
gatgtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaa |
5388588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 496
Target Start/End: Complemental strand, 5402563 - 5402397
Alignment:
| Q |
330 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccag |
429 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||| |
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| T |
5402563 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5402464 |
T |
|
| Q |
430 |
gaagtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
496 |
Q |
| |
|
|| |||| || ||||| || |||| ||| |||||||| ||||||||||| || |||||||||||||| |
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|
| T |
5402463 |
gatgtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaa |
5402397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 332 - 492
Target Start/End: Complemental strand, 5415296 - 5415136
Alignment:
| Q |
332 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccagga |
431 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||| || ||||||| ||| || | ||| |||||||||| | ||||||| ||| || ||||||||| |
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| T |
5415296 |
agcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccagga |
5415197 |
T |
|
| Q |
432 |
agtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatca |
492 |
Q |
| |
|
||||| || || | ||| |||||||| ||||| | ||||||||||| || |||||||||| |
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|
| T |
5415196 |
agtgttactacatgatcattgttaagattcacaataacagcagcacaacccgcaaatatca |
5415136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 496
Target Start/End: Complemental strand, 36267747 - 36267583
Alignment:
| Q |
332 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccagga |
431 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| || ||||||| ||| || |||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
36267747 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccagga |
36267648 |
T |
|
| Q |
432 |
agtgtgacaactttatccttgttaaggttcaccaccacagcagcacatccagcaaatatcaagaa |
496 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| ||| | |||||| || |||||||||||||| |
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|
| T |
36267647 |
agtgttacaacattttcattgttcttgttcaccaacaccgaagcacaaccggcaaatatcaagaa |
36267583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 36262586 - 36262498
Alignment:
| Q |
332 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattg |
420 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||||| ||| || | |||||||| | || |||||||||||||||| |
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|
| T |
36262586 |
agcaatagtaacagcaggattgaaatgagcaccagagatatgaccaagagagtaaatcaataccaacaaagttagtccccaaacaattg |
36262498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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