View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_14 (Length: 457)

Name: NF15523_low_14
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_14
NF15523_low_14
[»] chr7 (26 HSPs)
chr7 (278-441)||(38177213-38177376)
chr7 (1-37)||(10657160-10657196)
chr7 (1-37)||(18976006-18976042)
chr7 (1-37)||(22326704-22326740)
chr7 (1-37)||(30264494-30264530)
chr7 (1-37)||(41820929-41820965)
chr7 (1-37)||(43073909-43073945)
chr7 (2-37)||(28587002-28587037)
chr7 (1-35)||(39983440-39983474)
chr7 (1-37)||(584554-584590)
chr7 (1-37)||(2849949-2849985)
chr7 (1-37)||(5114039-5114075)
chr7 (1-37)||(10316616-10316652)
chr7 (5-37)||(12804449-12804481)
chr7 (1-37)||(16875841-16875877)
chr7 (1-37)||(22369571-22369607)
chr7 (1-37)||(26838151-26838187)
chr7 (1-37)||(27119026-27119062)
chr7 (1-29)||(31502883-31502911)
chr7 (1-37)||(32827798-32827834)
chr7 (1-37)||(37411138-37411174)
chr7 (1-37)||(38074568-38074604)
chr7 (1-37)||(38589492-38589528)
chr7 (1-37)||(39199113-39199149)
chr7 (5-37)||(41877767-41877799)
chr7 (1-37)||(46774176-46774212)
[»] chr2 (23 HSPs)
chr2 (104-337)||(18978257-18978489)
chr2 (104-205)||(34211620-34211721)
chr2 (1-35)||(1780358-1780392)
chr2 (251-337)||(34211722-34211808)
chr2 (1-37)||(1666937-1666973)
chr2 (1-37)||(2443458-2443494)
chr2 (1-37)||(3870823-3870859)
chr2 (1-37)||(3873589-3873625)
chr2 (1-37)||(21134585-21134621)
chr2 (1-37)||(41787064-41787100)
chr2 (7-37)||(23494509-23494539)
chr2 (1-37)||(518532-518568)
chr2 (1-37)||(1221217-1221253)
chr2 (381-441)||(18978153-18978213)
chr2 (1-37)||(19240793-19240829)
chr2 (1-37)||(19275120-19275156)
chr2 (1-37)||(22061046-22061082)
chr2 (1-37)||(26850001-26850037)
chr2 (1-37)||(28330811-28330847)
chr2 (1-37)||(33677309-33677345)
chr2 (1-37)||(39927669-39927705)
chr2 (1-37)||(40171716-40171752)
chr2 (1-29)||(44195638-44195666)
[»] chr8 (28 HSPs)
chr8 (36-98)||(31825825-31825887)
chr8 (1-37)||(1513502-1513538)
chr8 (1-37)||(12988160-12988196)
chr8 (1-37)||(17833976-17834012)
chr8 (1-37)||(21545322-21545358)
chr8 (1-37)||(26393998-26394034)
chr8 (1-37)||(29342773-29342809)
chr8 (1-37)||(31602892-31602928)
chr8 (1-35)||(9470876-9470910)
chr8 (1-35)||(9724653-9724687)
chr8 (1-35)||(29867326-29867360)
chr8 (1-29)||(2120438-2120466)
chr8 (1-37)||(4395443-4395479)
chr8 (1-37)||(9267703-9267739)
chr8 (1-37)||(18203197-18203233)
chr8 (1-37)||(19715294-19715330)
chr8 (1-33)||(22553219-22553251)
chr8 (1-37)||(24524003-24524039)
chr8 (1-29)||(26805003-26805031)
chr8 (1-37)||(28074440-28074476)
chr8 (1-37)||(34356581-34356617)
chr8 (1-37)||(37664913-37664949)
chr8 (1-37)||(37965015-37965051)
chr8 (1-29)||(39628917-39628945)
chr8 (1-29)||(39638467-39638495)
chr8 (1-37)||(40483794-40483830)
chr8 (1-29)||(40488214-40488242)
chr8 (1-37)||(40734877-40734913)
[»] scaffold0094 (1 HSPs)
scaffold0094 (111-265)||(14037-14191)
[»] chr5 (19 HSPs)
chr5 (104-199)||(12168643-12168738)
chr5 (1-37)||(937859-937895)
chr5 (1-37)||(23991778-23991814)
chr5 (1-37)||(35288182-35288218)
chr5 (1-37)||(37881609-37881645)
chr5 (1-37)||(39729739-39729775)
chr5 (1-35)||(13987615-13987649)
chr5 (1-35)||(27366412-27366446)
chr5 (1-35)||(39410596-39410630)
chr5 (1-37)||(4456460-4456496)
chr5 (1-37)||(4890116-4890152)
chr5 (1-37)||(6923080-6923116)
chr5 (1-37)||(13978403-13978439)
chr5 (1-37)||(25538107-25538143)
chr5 (1-37)||(26256366-26256402)
chr5 (1-37)||(28119049-28119085)
chr5 (1-37)||(34381549-34381585)
chr5 (1-29)||(36302873-36302901)
chr5 (1-37)||(37337092-37337128)
[»] chr3 (23 HSPs)
chr3 (1-37)||(11363116-11363152)
chr3 (1-37)||(335870-335906)
chr3 (1-37)||(1672876-1672912)
chr3 (1-37)||(33610269-33610305)
chr3 (1-40)||(10659264-10659303)
chr3 (1-35)||(33593130-33593164)
chr3 (1-35)||(33600261-33600295)
chr3 (1-34)||(13759817-13759850)
chr3 (1-37)||(4493374-4493410)
chr3 (1-37)||(5925366-5925402)
chr3 (1-37)||(8333620-8333656)
chr3 (1-37)||(21272695-21272731)
chr3 (1-37)||(23307843-23307879)
chr3 (1-37)||(27039060-27039096)
chr3 (1-29)||(29756700-29756728)
chr3 (1-37)||(30744919-30744955)
chr3 (1-37)||(31786862-31786898)
chr3 (1-37)||(43408334-43408370)
chr3 (1-37)||(49818345-49818381)
chr3 (1-37)||(51571819-51571855)
chr3 (1-37)||(52679766-52679802)
chr3 (1-29)||(53722231-53722259)
chr3 (1-37)||(54103927-54103963)
[»] chr1 (26 HSPs)
chr1 (1-37)||(17180739-17180775)
chr1 (1-37)||(15824294-15824330)
chr1 (104-160)||(19024550-19024606)
chr1 (1-37)||(42787923-42787959)
chr1 (1-35)||(31787138-31787172)
chr1 (1-35)||(39674086-39674120)
chr1 (1-42)||(3788109-3788150)
chr1 (1-42)||(29361422-29361463)
chr1 (1-42)||(29672365-29672406)
chr1 (1-37)||(4750378-4750414)
chr1 (1-37)||(8330207-8330243)
chr1 (1-29)||(10426587-10426615)
chr1 (1-37)||(27952673-27952709)
chr1 (1-37)||(27999688-27999724)
chr1 (1-37)||(28011134-28011170)
chr1 (1-29)||(28646224-28646252)
chr1 (1-37)||(30469582-30469618)
chr1 (1-37)||(38606156-38606192)
chr1 (1-29)||(39655428-39655456)
chr1 (5-37)||(43555004-43555036)
chr1 (1-37)||(45430072-45430108)
chr1 (1-37)||(46762183-46762219)
chr1 (1-37)||(48747301-48747337)
chr1 (1-37)||(50776230-50776266)
chr1 (1-29)||(52001187-52001215)
chr1 (1-29)||(52666887-52666915)
[»] scaffold0734 (1 HSPs)
scaffold0734 (1-37)||(6334-6370)
[»] scaffold0380 (1 HSPs)
scaffold0380 (1-37)||(16181-16217)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-37)||(45648-45684)
[»] chr6 (17 HSPs)
chr6 (1-37)||(4148249-4148285)
chr6 (1-37)||(6791952-6791988)
chr6 (1-37)||(6850077-6850113)
chr6 (1-37)||(20605636-20605672)
chr6 (1-37)||(32609859-32609895)
chr6 (1-36)||(7896949-7896984)
chr6 (1-35)||(29344045-29344079)
chr6 (1-35)||(30238878-30238912)
chr6 (1-42)||(15989767-15989808)
chr6 (4-37)||(16970484-16970517)
chr6 (1-37)||(1352538-1352574)
chr6 (1-37)||(3888629-3888665)
chr6 (1-37)||(5489649-5489685)
chr6 (1-37)||(6335123-6335159)
chr6 (1-37)||(6833813-6833849)
chr6 (1-37)||(11213563-11213599)
chr6 (1-37)||(24430216-24430252)
[»] chr4 (21 HSPs)
chr4 (1-37)||(2409809-2409845)
chr4 (1-37)||(19807005-19807041)
chr4 (1-37)||(32402746-32402782)
chr4 (1-37)||(37912514-37912550)
chr4 (1-42)||(43609325-43609366)
chr4 (1-37)||(1606969-1607005)
chr4 (1-37)||(2401291-2401327)
chr4 (1-37)||(3506077-3506113)
chr4 (1-37)||(6920670-6920706)
chr4 (1-37)||(18316836-18316872)
chr4 (1-29)||(20788314-20788342)
chr4 (1-37)||(23237067-23237103)
chr4 (1-37)||(25367422-25367458)
chr4 (1-37)||(26707344-26707380)
chr4 (1-37)||(32860797-32860833)
chr4 (1-37)||(35836119-35836155)
chr4 (1-37)||(38615235-38615271)
chr4 (1-37)||(41608803-41608839)
chr4 (1-37)||(47477151-47477187)
chr4 (1-37)||(49651027-49651063)
chr4 (1-37)||(52808885-52808921)
[»] scaffold0768 (1 HSPs)
scaffold0768 (1-37)||(6079-6115)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-37)||(18857-18893)
[»] scaffold0239 (2 HSPs)
scaffold0239 (1-29)||(1414-1442)
scaffold0239 (1-29)||(15909-15937)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 278 - 441
Target Start/End: Complemental strand, 38177376 - 38177213
Alignment:
Q  278 aaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177376 aaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgc 38177277  T
Q  378 atatggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaa 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177276 atatggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaa 38177213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10657160 - 10657196
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  10657160 aataggaaaagtaacattaatgttgcattggtattgt 10657196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18976042 - 18976006
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  18976042 aataggaaaagtaacattaatgttgcattggtattgt 18976006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22326704 - 22326740
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22326704 aataggaaaagtaacattaatgttgcattggtattgt 22326740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30264530 - 30264494
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30264530 aataggaaaagtaacattaatgttgcattggtattgt 30264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41820965 - 41820929
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41820965 aataggaaaagtaacattaatgttgcattggtattgt 41820929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43073909 - 43073945
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  43073909 aataggaaaagtaacattaatgttgcattggtattgt 43073945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 28587037 - 28587002
Alignment:
Q  2 ataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  28587037 ataggaaaagtaacattaatgttgcattggtattgt 28587002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39983440 - 39983474
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  39983440 aataggaaaagtaacattaatgttgtattagtatt 39983474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 584554 - 584590
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  584554 aatagaaaaagtaatattaatgttgcattagtattgt 584590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2849949 - 2849985
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  2849949 aatagaaaaagtaacattaatgttgcattggtattgt 2849985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5114039 - 5114075
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5114039 aataggaaaagtaacattaatgtttcattggtattgt 5114075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10316652 - 10316616
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  10316652 aataggaaaagtaacattaatgttacattggtattgt 10316616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 12804481 - 12804449
Alignment:
Q  5 ggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||||||||    
T  12804481 ggaaaagtaacattaatgttgcatgagtattgt 12804449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16875841 - 16875877
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  16875841 aataggaaaagtaacattaatgttgcactggtattgt 16875877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22369607 - 22369571
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  22369607 aataggaaaagtaacattaatgttccattggtattgt 22369571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26838151 - 26838187
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  26838151 aataggaaaagtaacattaatgttgtattggtattgt 26838187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27119026 - 27119062
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  27119026 aataggaaaagtaacattaatgtttcattggtattgt 27119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31502911 - 31502883
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  31502911 aataggaaaagtaacattaatgttgcatt 31502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32827798 - 32827834
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  32827798 aataggaaaagtaacattaatgtttcattggtattgt 32827834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37411174 - 37411138
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  37411174 aataggaaaagtaacattaaagttgcattggtattgt 37411138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38074604 - 38074568
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38074604 aataggaaaagtaacattaatgtttcattggtattgt 38074568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38589528 - 38589492
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  38589528 aataggaaaagtaacattaatttttcattagtattgt 38589492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39199149 - 39199113
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39199149 aataggaaaagtaacattaatgtttcattggtattgt 39199113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41877799 - 41877767
Alignment:
Q  5 ggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||| |||||||    
T  41877799 ggaaaagtaacattaatgttgcattggtattgt 41877767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46774212 - 46774176
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  46774212 aataggaaaagtaacattaatgtttcattggtattgt 46774176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 337
Target Start/End: Complemental strand, 18978489 - 18978257
Alignment:
Q  104 tatctatgcttcacaggtaatagttagaggaggtcaaagatggagaattggaaatggaaagagcataacggtgtgggcagatccgtggctgagggaggat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| ||  |||||||| |||||| |||||| ||||| |||    
T  18978489 tatctttgcttcacaggtaatagttagaggaggtcaaagatggtgaatcgaaaatggtaagagtattgcggtgtggacagatctgtggctaagggaagat 18978390  T
Q  204 gaaaattcgtatgtctctagtgaaaaaattcaaggcatggaaagaatgaaggtagcagatttgatgagtggagaaaattggaattgggatttgattgcag 303  Q
    || |||||||||||  | || | |||||| |||||  ||||||  |||||||| ||||||||||||||||||||||  ||||||||||   |||| ||||    
T  18978389 gagaattcgtatgttacaagcg-aaaaatccaaggtttggaaaatatgaaggttgcagatttgatgagtggagaaagctggaattgggggatgatagcag 18978291  T
Q  304 ccatttttaatgaacaagataggaaggctatatc 337  Q
      ||||||||||| || || ||||| || |||||    
T  18978290 ggatttttaatgatcatgacaggaaagcgatatc 18978257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 34211620 - 34211721
Alignment:
Q  104 tatctatgcttcacaggtaatagttagaggaggtcaaagatggagaattggaaatggaaagagcataacggtgtgggcagatccgtggctgagggaggat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||  |||||||| ||||||||||||| ||||| |||    
T  34211620 tatctttgcttcacaggtaatagttagaggaggtcaaagatggcgaattggaaatggtaagagtattgcggtgtggacagatccgtggctaagggaagat 34211719  T
Q  204 ga 205  Q
    ||    
T  34211720 ga 34211721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1780392 - 1780358
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1780392 aataggaaaagtaacattaatgttgcattagtatt 1780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 34211722 - 34211808
Alignment:
Q  251 gaaggtagcagatttgatgagtggagaaaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatc 337  Q
    |||||| ||||||||||||||||||||||  ||||||||||   |||| ||||  ||||||||||| || |||||||| || |||||    
T  34211722 gaaggttgcagatttgatgagtggagaaagctggaattgggggatgatagcagggatttttaatgatcatgataggaaagcgatatc 34211808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1666937 - 1666973
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1666937 aataggaaaagtaacattaatgttgcattggtattgt 1666973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2443458 - 2443494
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2443458 aataggaaaagtaacattaatgttgcattggtattgt 2443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3870859 - 3870823
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3870859 aataggaaaagtaacattaatgttgcattggtattgt 3870823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3873589 - 3873625
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3873589 aataggaaaagtaacattaatgttgcattggtattgt 3873625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21134585 - 21134621
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21134585 aataggaaaagtaacattaatgttgcattggtattgt 21134621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41787064 - 41787100
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41787064 aataggaaaagtaacattaatgttgcattggtattgt 41787100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 23494539 - 23494509
Alignment:
Q  7 aaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||||||||||    
T  23494539 aaaagtaacattaatgttgcattagtattgt 23494509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 518568 - 518532
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  518568 aataggaaaagtaacattaatgttacattggtattgt 518532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1221217 - 1221253
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  1221217 aataggaaaagtaacattaatgtttcattggtattgt 1221253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 18978213 - 18978153
Alignment:
Q  381 tggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaa 441  Q
    ||||| |||||| |||| |||  ||||||||||| ||| |||||||||||||| |||||||    
T  18978213 tggaagtttaatcgtcatggaaattatacggtaaggtcggcatatagatatgcaatggaaa 18978153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19240793 - 19240829
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  19240793 aataggaaaagtaacattaatgtttcattggtattgt 19240829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19275120 - 19275156
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  19275120 aataggaaaagtaacattaatgtttcattggtattgt 19275156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22061082 - 22061046
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  22061082 aataggaaaagtaacattaatgtttcattggtattgt 22061046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26850001 - 26850037
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  26850001 aataggaaaagtaacattaatgtttcattggtattgt 26850037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28330847 - 28330811
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28330847 aataggaaaagtaacattaatgtttcattggtattgt 28330811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33677309 - 33677345
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  33677309 aataggaaaagtaacattaatgtttcatcagtattgt 33677345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39927669 - 39927705
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39927669 aataggaaaagtaacattaatgtttcattggtattgt 39927705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40171716 - 40171752
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  40171716 aataggaaaagtaacattaatgtttcattggtattgt 40171752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44195666 - 44195638
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  44195666 aataggaaaagtaacattaatgttgcatt 44195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 31825825 - 31825887
Alignment:
Q  36 gttaaatctttagctgctttgattgtatgtttgttgtaaaataatgaaagtgttgaataagtg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825825 gttaaatctttagctgctttgattgtatgtttgttgtaaaataatgaaagtgttgaataagtg 31825887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1513502 - 1513538
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1513502 aataggaaaagtaacattaatgttgcattggtattgt 1513538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12988160 - 12988196
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12988160 aataggaaaagtaacattaatgttgcattggtattgt 12988196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17834012 - 17833976
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17834012 aataggaaaagtaacattaatgttgcattggtattgt 17833976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21545358 - 21545322
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21545358 aataggaaaagtaacattaatgttgcattggtattgt 21545322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26393998 - 26394034
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26393998 aataggaaaagtaacattaatgttgcattggtattgt 26394034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29342809 - 29342773
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29342809 aataggaaaagtaacattaatgttgcattggtattgt 29342773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31602892 - 31602928
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31602892 aataggaaaagtaacattaatgttgcattggtattgt 31602928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9470910 - 9470876
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  9470910 aataggaaaagtaacattaatgttgcattggtatt 9470876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9724687 - 9724653
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  9724687 aataggaaaagtaacattaatgttgcattggtatt 9724653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29867360 - 29867326
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  29867360 aataggaaaagtaacattaatgttgcattggtatt 29867326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2120438 - 2120466
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  2120438 aataggaaaagtaacattaatgttgcatt 2120466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4395443 - 4395479
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  4395443 aataggaaaagtaacattaaagttgcattggtattgt 4395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9267739 - 9267703
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  9267739 aataggaaaaataacattaatgttgcattggtattgt 9267703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18203197 - 18203233
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  18203197 aataggaaaagtaacattaatgtttcattggtattgt 18203233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19715330 - 19715294
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  19715330 aataggaaaagtaacattaatgtttcattggtattgt 19715294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22553219 - 22553251
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagta 33  Q
    ||||| |||||||||||||||||||||||||||    
T  22553219 aatagaaaaagtaacattaatgttgcattagta 22553251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24524039 - 24524003
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  24524039 aataggaaaagtaacattaacgttgcattggtattgt 24524003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26805003 - 26805031
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  26805003 aataggaaaagtaacattaatgttgcatt 26805031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28074440 - 28074476
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28074440 aataggaaaagtaacattaatgtttcattggtattgt 28074476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34356617 - 34356581
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  34356617 aataggaaaagtaacattaatgttgtattggtattgt 34356581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37664913 - 37664949
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  37664913 aataggaaaagtaacattaatgtttcattaatattgt 37664949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37965015 - 37965051
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  37965015 aatagaaaaagtaacattaatgtttcattagtattgt 37965051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39628945 - 39628917
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  39628945 aataggaaaagtaacattaatgttgcatt 39628917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39638495 - 39638467
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  39638495 aataggaaaagtaacattaatgttgcatt 39638467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40483830 - 40483794
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  40483830 aataggaaaagtaacattaatgtttcattggtattgt 40483794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40488242 - 40488214
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  40488242 aataggaaaagtaacattaatgttgcatt 40488214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40734877 - 40734913
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  40734877 aataggaaaagtaacattaaagttgcattggtattgt 40734913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 14037 - 14191
Alignment:
Q  111 gcttcacaggtaatagttagaggaggtcaaagatggagaattggaaatggaaagagcataacggtgtgggcagatccgtggctgagggaggatgaaaatt 210  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||| || |||||  |  | ||| ||||||| ||| || | |||||||  || |    
T  14037 gcttcacaggtattagttagaggaggtcaaaggtggagaattgggaatggcaaaagcattgcaatttggacagatccatggttgcgagaggatgggaact 14136  T
Q  211 cgtatgtctctagtgaaaaaattcaaggcatggaaagaatgaaggtagcagattt 265  Q
    | ||||| || ||||||||| | ||||| |  ||||| |||||||| ||||||||    
T  14137 catatgtttcaagtgaaaaagtgcaagggacagaaagtatgaaggttgcagattt 14191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 12168643 - 12168738
Alignment:
Q  104 tatctatgcttcacaggtaatagttagaggaggtcaaagatggagaattggaaatggaaagagcataacggtgtgggcagatccgtggctgaggga 199  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||  |||| ||| | ||||| ||| |||||||    
T  12168643 tatctttgctttacaggtattagttagaggaggtcaaaggtggcgaattggaaatggtaagaacatcgcggtatggactgatccttggttgaggga 12168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 937895 - 937859
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  937895 aataggaaaagtaacattaatgttgcattggtattgt 937859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23991814 - 23991778
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  23991814 aataggaaaagtaacattaatgttgcattggtattgt 23991778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35288218 - 35288182
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35288218 aataggaaaagtaacattaatgttgcattggtattgt 35288182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37881609 - 37881645
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37881609 aataggaaaagtaacattaatgttgcattggtattgt 37881645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39729739 - 39729775
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39729739 aataggaaaagtaacattaatgttgcattggtattgt 39729775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13987649 - 13987615
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  13987649 aataggaaaagtaacattaatgttgcattggtatt 13987615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27366412 - 27366446
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  27366412 aataggaaaagtaacattaatgttgcattggtatt 27366446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39410596 - 39410630
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39410596 aataggaaaagtaacattaatgtttcattagtatt 39410630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4456496 - 4456460
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4456496 aataggaaaagtaacattaatgtttcattggtattgt 4456460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4890116 - 4890152
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4890116 aataggaaaagtaacattaatgtttcattggtattgt 4890152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6923116 - 6923080
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  6923116 aataggaaaaataacattaatgtttcattagtattgt 6923080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13978403 - 13978439
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  13978403 aataggaaaagtaacattaatgtttcattggtattgt 13978439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25538143 - 25538107
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  25538143 aataggaaaagtaacattaatgttacattggtattgt 25538107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26256402 - 26256366
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26256402 aataggaaaaataacattaatgttgcattaatattgt 26256366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28119049 - 28119085
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28119049 aataggaaaagtaacattaatgtttcattggtattgt 28119085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34381549 - 34381585
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  34381549 aataggaaaagtaacattaatgtttcattggtattgt 34381585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36302873 - 36302901
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  36302873 aataggaaaagtaacattaatgttgcatt 36302901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37337128 - 37337092
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  37337128 aataggaaaagtaacattaatgtttcatttgtattgt 37337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11363152 - 11363116
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11363152 aataggaaaagtaacattaatgttgcattagtattgt 11363116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 335870 - 335906
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  335870 aataggaaaagtaacattaatgttgcattggtattgt 335906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1672876 - 1672912
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1672876 aataggaaaagtaacattaatgttgcattggtattgt 1672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33610269 - 33610305
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33610269 aataggaaaagtaacattaatgttgcattggtattgt 33610305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10659303 - 10659264
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  10659303 aataggaaaagtaacattaatgtttcattggtattgttaa 10659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33593130 - 33593164
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  33593130 aataggaaaagtaacattaatgttgcattggtatt 33593164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33600261 - 33600295
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  33600261 aataggaaaagtaacattaatgttgcattggtatt 33600295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13759817 - 13759850
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtat 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  13759817 aataggaaaagtaacattaatgttgcattggtat 13759850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4493374 - 4493410
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  4493374 aataggaaaagtaacattaatgtttcattaatattgt 4493410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5925402 - 5925366
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  5925402 aataggaaaaataacattaatgttgcattggtattgt 5925366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8333620 - 8333656
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  8333620 aatagaaaaagtaatattaatgttgcattagtattgt 8333656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21272731 - 21272695
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  21272731 aataggaaaagtaacattaaagttgcattggtattgt 21272695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23307879 - 23307843
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  23307879 aatagaaaaagtaacattaatgttacattagtattgt 23307843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27039060 - 27039096
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  27039060 aataggaaaagtaacattaatgtttcattggtattgt 27039096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29756700 - 29756728
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  29756700 aataggaaaagtaacattaatgttgcatt 29756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30744955 - 30744919
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  30744955 aataggaaaagtaacattaatgtttcattggtattgt 30744919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31786898 - 31786862
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  31786898 aataggaaaagtaacattaatgtttcattggtattgt 31786862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43408370 - 43408334
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  43408370 aataggaaaaataacattaatgttgcattggtattgt 43408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49818381 - 49818345
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  49818381 aatagaaaaagtaacattaatgttgcattggtattgt 49818345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51571855 - 51571819
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  51571855 aataggaaaagtaccattaatgttgcattggtattgt 51571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52679766 - 52679802
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  52679766 aataggaaaagtaacattaatgtttcattggtattgt 52679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 53722259 - 53722231
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  53722259 aataggaaaagtaacattaatgttgcatt 53722231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54103927 - 54103963
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  54103927 aataggaaaagtaacattaatgtttcattggtattgt 54103963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17180775 - 17180739
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  17180775 aataggaaaagtaacattaatgttgcattagtattgt 17180739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15824294 - 15824330
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15824294 aataggaaaagtaacattaatgtttcattagtattgt 15824330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 19024606 - 19024550
Alignment:
Q  104 tatctatgcttcacaggtaatagttagaggaggtcaaagatggagaattggaaatgg 160  Q
    ||||| ||||||||||||| |||||||||| |||||||| ||| | |||||||||||    
T  19024606 tatctttgcttcacaggtattagttagaggcggtcaaaggtggcgcattggaaatgg 19024550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42787959 - 42787923
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42787959 aataggaaaagtaacattaatgttgcattggtattgt 42787923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31787172 - 31787138
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  31787172 aataggaaaagtaacattaatgttgcattggtatt 31787138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39674120 - 39674086
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  39674120 aataggaaaagtaacattaatgttgcattggtatt 39674086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3788150 - 3788109
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaaat 42  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  3788150 aataggaaaagtaacattaatattgcatttgtattgtaaaat 3788109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29361422 - 29361463
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaaat 42  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  29361422 aataggaaaagtaacattaatgtttcattggtattgtaaaat 29361463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29672406 - 29672365
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaaat 42  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  29672406 aataggaaaagtaacattaatgtttcattggtattgtaaaat 29672365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4750378 - 4750414
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4750378 aataggaaaagtaacattaatgtttcattggtattgt 4750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8330243 - 8330207
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  8330243 aataggaaaaataacattaatgttgcattggtattgt 8330207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10426615 - 10426587
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  10426615 aataggaaaagtaacattaatgttgcatt 10426587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27952709 - 27952673
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  27952709 aataggaaaagtaacattaatgtttcattggtattgt 27952673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27999724 - 27999688
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  27999724 aataggaaaagtaacattaacgttacattagtattgt 27999688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28011170 - 28011134
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  28011170 aataggaaaagtaacattaaagttgcattggtattgt 28011134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28646252 - 28646224
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  28646252 aataggaaaagtaacattaatgttgcatt 28646224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30469618 - 30469582
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  30469618 aataggaaaagtatcattaatgttgcattggtattgt 30469582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38606156 - 38606192
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38606156 aataggaaaagtaacattaatgtttcattggtattgt 38606192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39655456 - 39655428
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  39655456 aataggaaaagtaacattaatgttgcatt 39655428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 43555004 - 43555036
Alignment:
Q  5 ggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||| |||||||    
T  43555004 ggaaaagtaacattaatgttgcattggtattgt 43555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45430108 - 45430072
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  45430108 aatagaaaaagtaacattaatgttgcattggtattgt 45430072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46762219 - 46762183
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||| |||||||||||||||||||||||| |||||||    
T  46762219 aataagaaaagtaacattaatgttgcattggtattgt 46762183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48747337 - 48747301
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  48747337 aataggaaaaataacattaatgttgcattggtattgt 48747301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50776266 - 50776230
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  50776266 aataggaaaagtaacattaatgttgcatgggtattgt 50776230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52001187 - 52001215
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  52001187 aataggaaaagtaacattaatgttgcatt 52001215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52666915 - 52666887
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  52666915 aataggaaaagtaacattaatgttgcatt 52666887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6370 - 6334
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6370 aataggaaaagtaacattaatgttgcattggtattgt 6334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16181 - 16217
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16181 aataggaaaagtaacattaatgttgcattggtattgt 16217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45684 - 45648
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  45684 aataggaaaagtaacattaatgttgcattggtattgt 45648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4148249 - 4148285
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4148249 aataggaaaagtaacattaatgttgcattcgtattgt 4148285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6791952 - 6791988
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6791952 aataggaaaagtaacattaatgttgcattggtattgt 6791988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6850113 - 6850077
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6850113 aataggaaaagtaacattaatgctgcattagtattgt 6850077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20605672 - 20605636
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20605672 aataggaaaagtaacattaatgttgcattggtattgt 20605636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32609895 - 32609859
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32609895 aataggaaaagtaacattaatgttgcattggtattgt 32609859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7896949 - 7896984
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  7896949 aataggaaaagtaacattaatgttgcattggtattg 7896984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29344079 - 29344045
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  29344079 aataggaaaagtaacattaatgttgcattggtatt 29344045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30238912 - 30238878
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtatt 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  30238912 aataggaaaaataacattaatgttgcattagtatt 30238878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15989767 - 15989808
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaaat 42  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  15989767 aataggaaaagtaacattaatgtttcattggtattgtaaaat 15989808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 16970517 - 16970484
Alignment:
Q  4 aggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||||| |||||||    
T  16970517 aggaaaagtaacattaatgttgcattggtattgt 16970484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1352574 - 1352538
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  1352574 aataggaaaagtaacattaatgtttcattggtattgt 1352538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3888665 - 3888629
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  3888665 aataggaaaagtaacattaatgtttcattggtattgt 3888629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5489685 - 5489649
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  5489685 aatagaaaaagtaacattaatgttgcattggtattgt 5489649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6335123 - 6335159
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  6335123 aataggaaaagtaacattaaagttgcattggtattgt 6335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6833849 - 6833813
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6833849 aataggaaaagtaacattaatgttacattggtattgt 6833813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11213563 - 11213599
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  11213563 aatagaaaaagtaacattaatgttgcattggtattgt 11213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24430252 - 24430216
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  24430252 aataggaaatgtaacattaatgttgcattggtattgt 24430216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2409845 - 2409809
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2409845 aataggaaaagtaacattaatgttgcattggtattgt 2409809  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19807005 - 19807041
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19807005 aataggaaaagtaacattaatgttgcattggtattgt 19807041  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32402782 - 32402746
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32402782 aataggaaaagtaacattaatgttgcattggtattgt 32402746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37912550 - 37912514
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37912550 aataggaaaagtaacattaatgttgcattggtattgt 37912514  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43609366 - 43609325
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgttaaat 42  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  43609366 aataggaaaagtaacattaatgtttcattggtattgtaaaat 43609325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1606969 - 1607005
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  1606969 aataggaaaaataacattaatgttgcattggtattgt 1607005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2401327 - 2401291
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  2401327 aataggaaaagtaacattaatgtttcattggtattgt 2401291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3506113 - 3506077
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  3506113 aataggaaaagtaacattaatgtttcatttgtattgt 3506077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6920706 - 6920670
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6920706 aataggaaaagtaacattaatgtttcattggtattgt 6920670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18316872 - 18316836
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  18316872 aataggaaaagtaacattaatgtttcattaatattgt 18316836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 20788314 - 20788342
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  20788314 aataggaaaagtaacattaatgttgcatt 20788342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23237103 - 23237067
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23237103 aataggaaaagtaacattaatgttacattggtattgt 23237067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25367422 - 25367458
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  25367422 aataggaaaagtaacattaatgtttcattggtattgt 25367458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26707344 - 26707380
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  26707344 aataggaaaagtagcattaatgttgcattggtattgt 26707380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32860797 - 32860833
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  32860797 aataggaaaagtaacattaatgtttcattggtattgt 32860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35836155 - 35836119
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  35836155 aataggaaaagtaacattaatgtttcattggtattgt 35836119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38615235 - 38615271
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38615235 aataggaaaagtaacattaatgttacatttgtattgt 38615271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41608803 - 41608839
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  41608803 aataggaaaagtaacattaaagttgcattggtattgt 41608839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47477151 - 47477187
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  47477151 aataggaaaagtaacattaaagttgcattggtattgt 47477187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49651027 - 49651063
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  49651027 aataggaaaaataacattaatgttgcattggtattgt 49651063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52808921 - 52808885
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  52808921 aataggaaaagtaacgttaatgttgcattggtattgt 52808885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6079 - 6115
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6079 aataggaaaagtaacattaatgttacattggtattgt 6115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18857 - 18893
Alignment:
Q  1 aataggaaaagtaacattaatgttgcattagtattgt 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  18857 aataggaaaagtaacattaaagttgcattggtattgt 18893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1414 - 1442
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  1414 aataggaaaagtaacattaatgttgcatt 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15909 - 15937
Alignment:
Q  1 aataggaaaagtaacattaatgttgcatt 29  Q
    |||||||||||||||||||||||||||||    
T  15909 aataggaaaagtaacattaatgttgcatt 15937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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