View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_19 (Length: 431)
Name: NF15523_low_19
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 36643478 - 36643067
Alignment:
| Q |
1 |
gctctttttctccttcacccttttcactatcttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaag |
100 |
Q |
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| T |
36643478 |
gctctttttctccttcacccttttcactatcttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaag |
36643379 |
T |
|
| Q |
101 |
ggtgttggaaaatgaatggttttttgaagaaaacaacttggtgtttggnnnnnnntaagttgggttttgcttagagttgatttgggtggttcttgttggc |
200 |
Q |
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| T |
36643378 |
ggtgttggaaaatgaatggttttttgaagaaaacaacttggtgtttggaaaaaaataagttgggttttgcttagagttgatttgggtggttcttgttggc |
36643279 |
T |
|
| Q |
201 |
aatgaaagtgcagtgtagtgaccactagtggtggtagacatagataatgacatggttatgttaagctcaaaacttcgatgttccttttgaattctatcag |
300 |
Q |
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| T |
36643278 |
aatgaaagtgcagtgtagtgaccactagtggtggtggacatagataatgacatggt--tgttaagctcagaacttcgatgttccttttgaattctatgag |
36643181 |
T |
|
| Q |
301 |
agaaatgttatgttcctttgagcataggtaggttaccacaaagaagaagatgagaggttctgtgtagattttgctgaagtggctctcaaggcacatccat |
400 |
Q |
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| T |
36643180 |
agaaatgttatgttcctttgagca----taggttaccacaaagaagaagatgagaggttctgtgtagattttgctgaagtggctctcaaggcacatccat |
36643085 |
T |
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| Q |
401 |
tcaattcgctagtattat |
418 |
Q |
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| T |
36643084 |
tcaattcactagtattat |
36643067 |
T |
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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 10883209 - 10883285
Alignment:
| Q |
181 |
tttgggtggttcttgttggcaatgaaagtgcagtgtagtgaccactagtggtggtagacatagataatgacatggtt |
257 |
Q |
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| T |
10883209 |
tttggatggttctggttggcaatgtaagtccaaagtagtgaccactagtggtggtaaacatagataatgacatggtt |
10883285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 10883688 - 10883734
Alignment:
| Q |
370 |
tttgctgaagtggctctcaaggcacatccattcaattcgctagtatt |
416 |
Q |
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| T |
10883688 |
tttgctgaagtggttctcaaggcacatccattcaattcactggtatt |
10883734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 43172500 - 43172570
Alignment:
| Q |
166 |
tttgcttagagttgatttgggtggttcttgttggcaatgaaagtgcagtgtagt----gaccactagtggt |
232 |
Q |
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| T |
43172500 |
tttgcttagagtggatttgggtggttcttgttggcaatgaaagtgcagggtagttagtgaccactagtggt |
43172570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 43172396 - 43172466
Alignment:
| Q |
32 |
ttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaaggg |
102 |
Q |
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|||||||||||| | ||| | || ||| ||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
43172396 |
ttctttggatgcttttgaccaaacctcacatgaagctttatccacaaataggaatggttttgacaaaaggg |
43172466 |
T |
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