View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_2 (Length: 710)
Name: NF15523_low_2
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 3 - 694
Target Start/End: Complemental strand, 17683506 - 17682818
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaagttgg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17683506 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcactaacttgaagttgg |
17683407 |
T |
|
| Q |
103 |
aaaagtcattgaagttggaagctttctagaaacttcctctacgtcttggagtgtgaactatcagaactgcgaagtatttgaaataaactaattgcatact |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17683406 |
aaaagtcattgaagttggaagctttttagaaacttcctctacgtcttggagtgtgaactatcagaactgcgaagtatttgaaataaactaattgcatact |
17683307 |
T |
|
| Q |
203 |
cagattttttgagttggttggttgggggagatataatttgtacaagtttagtttttgatctgaaactcaagtcacaatggatgataaattgataatggaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |
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| T |
17683306 |
cagattttttgagttggttggttgggggagatataatttgtacaagtttagtttttgaacttaaactcaagtcacaatggatgataaattgataatgg-a |
17683208 |
T |
|
| Q |
303 |
aggttcaattatatgtgatgccagtttgttgattctttttatgttcactcaattagatgttttttcttcttcaattttgtttattaagttcctctacatt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17683207 |
aggttcaattatatgtgatgccagtttgttgattctttttatgttcactcaattagatgttttttcttcttcaattttgtttattaagttcctctacatt |
17683108 |
T |
|
| Q |
403 |
ttgttcttagttgtaatgaaggaagatgtaattaaccaaaatattataaacctattgggaccatctttgaaaacaatatttaggctaacaataactgtga |
502 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17683107 |
ttgttc-tagttgtaatgaaggaagatgtaattaaccaaaatattataaacctattgggaccatctttgaaaacaatatttaggctaacaataactttga |
17683009 |
T |
|
| Q |
503 |
attgaagaactccccctctccaacaaataaccagccctggtttttcccaccaaacatctatcttccattttctttattgaggtgagatggtgttttgcgg |
602 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
17683008 |
attgaagaactctccctctccaacaaataaccggccctagtttttcccacctaacatctctcttctattttctttattgagatgagatggtg-tttgcgg |
17682910 |
T |
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| Q |
603 |
tctttgttggcccgaaatcaccctttttcatctttatctcatcttttagtctaaataagcgattttcacatagatgtaactttttgtatcat |
694 |
Q |
| |
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||||||||| ||||||||||||| | ||||||||||||||||| |||| ||||||||| |||||||||||||||| || |||| |||||||| |
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| T |
17682909 |
tctttgttgacccgaaatcacccctcttcatctttatctcatcgtttaatctaaataaacgattttcacatagatctagctttctgtatcat |
17682818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 17563776 - 17563870
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaa |
97 |
Q |
| |
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| T |
17563776 |
gataaattcaacaagattatagatttggcatttagtaatgacaagttgttcatgaaagatctgaattcctcatttgaatttttcatgaacttgaa |
17563870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 17621743 - 17621700
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaa |
46 |
Q |
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| T |
17621743 |
gataaatacgagaagattataaacatggcatttagcaacgacaa |
17621700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 3 - 696
Target Start/End: Original strand, 14661755 - 14662439
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaagttgg |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14661755 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttacggaatgcttttaattccttatttgaatttttcactaacttgaagttgg |
14661854 |
T |
|
| Q |
103 |
aaaagtcattgaagttggaagctttctagaaacttcctctacgtcttggagtgtgaactatcagaactgcgaagtatttgaaataaactaattgcatact |
202 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14661855 |
aaaaggcattgaagttggaagctttctagaaacttcctctacgtcttagagtgtgaactatcagaactgcgaagtatttgaaataaacgaattgcatact |
14661954 |
T |
|
| Q |
203 |
cagattttttgagttggttggttgggggagatataatttgtacaagtttagtttttgatctgaaactcaagtcacaatggatgataaattgataatggaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |
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| T |
14661955 |
cagattttttgagttggttggttgggggagatataatttgtacaagtttagtttttgaacttaaactcaagtcaaaatggatgataaattgataatggaa |
14662054 |
T |
|
| Q |
303 |
aggttcaattatatgtgatgccagtttgttgattctttttatgttcactcaattagatgttttttcttcttcaattttgtttatta---agttcctctac |
399 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
14662055 |
-ggttcaattatatgtgatgccaatttgttgattctttttatgttcactcaattagaggttttttcttcttcaattttgtttattattaagttcctctac |
14662153 |
T |
|
| Q |
400 |
attttgttcttagttgtaatgaaggaagatgtaattaaccaaaatattataaacctattgggaccatctttgaaaacaatatttaggctaacaataactg |
499 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14662154 |
attttgttcttggttgtaatgaaagaagatgtaattaaccaaaatg--ataagcctattgggaccatctttgaaaacaatatgtaggctaacaataacat |
14662251 |
T |
|
| Q |
500 |
tgaattgaagaactccccctctccaacaaataaccagccctggtttttcccaccaaacatctatcttccattttctttattgaggtgagatggtgttttg |
599 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
14662252 |
tgaattgaagaactctccctctccaacaaataaccgaccctagtttttcccacctaacatctctcttctattttctttattgag-----atggtgttttg |
14662346 |
T |
|
| Q |
600 |
cggtctttgttggcccgaaatcaccctttttcatctttatctcatcttttagtctaaataagcgattttcacatagatgtaactttttgtatcatga |
696 |
Q |
| |
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|||||||||||| ||||||||||| | | ||||||||| |||||||| ||||||||| |||||||||||| ||| || |||| |||||||||| |
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| T |
14662347 |
cggtctttgttgacccgaaatcactcctcttcatctttt----atcttttaatctaaataaacgattttcacattgatctagctttctgtatcatga |
14662439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 14749774 - 14749680
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaa |
97 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||| |||| | |||| |||| ||| ||||||| ||||||||||||| |||||||| |
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| T |
14749774 |
gataaatacgacaagattataaacttggaatttagtaacaacaatatgttccaaaatgttttgaattcctggtttgaatttttcattaacttgaa |
14749680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 14764823 - 14764729
Alignment:
| Q |
3 |
gataaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaa |
97 |
Q |
| |
|
||||||| | ||||||||||| | |||||||||||||||||||||| ||| ||| | | | ||||||| |||||||||||||| |||||||| |
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| T |
14764823 |
gataaattcaacaagattatagatttggcatttagtaatgacaagttgttcatgaaagatctgaattcctcatttgaatttttcatgaacttgaa |
14764729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 24395240 - 24395149
Alignment:
| Q |
6 |
aaatacgacaagattataaacatggcatttagtaatgacaagtttttccggaatgcttttaattccttatttgaatttttcaccaacttgaa |
97 |
Q |
| |
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||||||||||||||||||||| |||||| | || ||||||| ||||| ||||||||| ||||||| ||||||| ||||| |||||||| |
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| T |
24395240 |
aaatacgacaagattataaaccaggcattcaacaacgacaagtctttccagaatgctttgaattcctcgtttgaatatttcattaacttgaa |
24395149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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