View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_20 (Length: 429)
Name: NF15523_low_20
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_20 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 156 - 417
Target Start/End: Complemental strand, 6307913 - 6307659
Alignment:
| Q |
156 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactaagtgatggccnnnnnnnnnnnnnnnnnnnnnngtatatg |
255 |
Q |
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| T |
6307913 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactaagtgatggccagataaaaataaataaataaaagtatatg |
6307814 |
T |
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| Q |
256 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaaatttcaagcaagctatccactataaaattggttgagtggaattagacaaagtca |
355 |
Q |
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| T |
6307813 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaa-------gcaagctatccactataaaattggtttagtggaattagacaaagtca |
6307721 |
T |
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| Q |
356 |
aacacaaaatagagaaaagcaacaaatattattgattgaataattttcccacaatattcttc |
417 |
Q |
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| T |
6307720 |
aacacaaaatagagaaaagcaacaaatattattgattaaatagttttccaacaattttcttc |
6307659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 6308568 - 6308536
Alignment:
| Q |
19 |
agaaaattcgcaaagggatttggactcggagct |
51 |
Q |
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| T |
6308568 |
agaaaattcgcaaagggatttggactcagagct |
6308536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 107815 - 107776
Alignment:
| Q |
117 |
atagaataggaaaagtgctccctctaggtgttccacgaaa |
156 |
Q |
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| T |
107815 |
atagaataggaaaagtgctacctctaggtgttccacgaaa |
107776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 29451525 - 29451492
Alignment:
| Q |
19 |
agaaaattcgcaaagggatttggactcggagctt |
52 |
Q |
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| T |
29451525 |
agaaaattcgcaaagggatttggactcggggctt |
29451492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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