View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_21 (Length: 413)
Name: NF15523_low_21
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 2250673 - 2251057
Alignment:
| Q |
18 |
ctaatctgcaatcattcatcaagaatttagaacaaacaccgaaatgaacggtttagaattagcaaaaaggatgattttgatgcaaagaaacgtgaatcca |
117 |
Q |
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| T |
2250673 |
ctaatctgcaatcattcatcaagaatttagaacaaacaccgaaatgaacggtttagaattagcaaaaaggatgattttgatgcaaagaaacgtgaatccc |
2250772 |
T |
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| Q |
118 |
ggaattagcaaaaggctgatagtaccaaaaataattcaagatttattaagtaaattagtatgcaagaagtatatgcaaagaagaacttacattaatatca |
217 |
Q |
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| T |
2250773 |
ggaattagcaaaaggttgatggtaccaaaaataattcaagatttattaagtaaattagtatgcaagaagtatatgcaaagaagaacttacattaatatca |
2250872 |
T |
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| Q |
218 |
gacttatttgtctatctcccttattttttctatctgttgttttttctctgatggtgttaactcctttcacgcagatgaacattggggagaagttaaaatt |
317 |
Q |
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| T |
2250873 |
gacttatttgtctatctcccttattttttctatctgttgttttttctctgatggtgttaactcctttcacgcagatgaacattggggagaagttaaaatt |
2250972 |
T |
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| Q |
318 |
gttttatatttttgtaattgttgagcagttgtaaggggtaaattaggaatggaaaataggctacaccaaaaaatgtattgccttt |
402 |
Q |
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| T |
2250973 |
gttttatatttttgtaattgttgagcagttgtaaggggtaaattgggaatggaaaataggctacaccaaaaaatgtattaccttt |
2251057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 7826137 - 7826210
Alignment:
| Q |
19 |
taatctgcaatcattcatcaagaatttagaacaaacaccgaaatgaacggtttagaattagcaaaaaggatgatt |
93 |
Q |
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| T |
7826137 |
taatctgcaatcattcatcaagaattcggatcaaacacctaagtgaacggtttagaatcag-gaaaaggatgatt |
7826210 |
T |
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