View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_22 (Length: 398)

Name: NF15523_low_22
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_22
NF15523_low_22
[»] chr4 (14 HSPs)
chr4 (1-380)||(2376039-2376427)
chr4 (122-194)||(2360921-2360993)
chr4 (130-254)||(2381314-2381438)
chr4 (122-168)||(2380051-2380097)
chr4 (122-249)||(2460600-2460727)
chr4 (195-249)||(2367678-2367732)
chr4 (122-168)||(2390934-2390980)
chr4 (193-254)||(2486305-2486366)
chr4 (123-169)||(2525951-2525997)
chr4 (123-165)||(2536689-2536731)
chr4 (128-254)||(2547530-2547656)
chr4 (123-169)||(5101951-5101997)
chr4 (123-169)||(5106223-5106269)
chr4 (195-249)||(12126883-12126937)
[»] chr8 (1 HSPs)
chr8 (122-254)||(39516855-39516987)
[»] chr3 (1 HSPs)
chr3 (188-249)||(51763147-51763208)
[»] chr5 (2 HSPs)
chr5 (130-245)||(39252840-39252955)
chr5 (197-249)||(32268773-32268825)
[»] chr1 (2 HSPs)
chr1 (186-249)||(15837956-15838019)
chr1 (187-239)||(52085555-52085607)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 2376039 - 2376427
Alignment:
Q  1 agttacaaagattagggaaaaatagagagaaactggttactttgtaacaatggtggcagcatcatcatcatccaaatccaacgcagnnnnnnn--cccta 98  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||    
T  2376039 agttacaaggattagggaaaaatagagagaaactggttactttgtaacaatggtggcagcatcatcatcatccaaatccaaggcagaaaaaaaaacccta 2376138  T
Q  99 tgaagcgagcaagggcagcagtctgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctct 198  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  2376139 tgaaccgagcaagggcggcagtgtgttcatatttaccatatgagttatgggaatacatcatcaaattcctcgccggcgacaacccctctttgaagtctct 2376238  T
Q  199 ctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctcggtc----atc----atcaaaccgttcttttcattccctcgcctattcc 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||||||||||||||||||||||| ||||||||||    
T  2376239 ctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctcggtcacaaatcacagatcaaaccgttcttttcattccc-cgcctattcc 2376337  T
Q  291 gaaggtttcctaacatcacattcctcgacctcactcacttttctcgagtgagtgacctcgacgctcttgttacccaaatctccactttcc 380  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2376338 gaaggttccctaacatcacatccctcgacctcacacacttttctcgagtgagtgacctcgacgctcttgttacccaaatctccactttcc 2376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 2360921 - 2360993
Alignment:
Q  122 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagt 194  Q
    ||||| ||||||||||||||| ||||||||  ||||||||||||||||  |||||| |||||| |||||||||    
T  2360921 tgttcgtatttaccagatgagctatgggaacacatcatcaaattcctcagcggcgataaccccactttgaagt 2360993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 2381314 - 2381438
Alignment:
Q  130 tttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatc 229  Q
    ||||||||||||  ||||||||| ||||||||||||||||   || ||| ||  | |||| |||||||| |||||||||||||||   || ||||| |||    
T  2381314 tttaccagatgacctatgggaatacatcatcaaattcctcaatggagaccactgcactttcaagtctctttccatcgtctccaaacagttactctcgatc 2381413  T
Q  230 accaaccgtttccgattctcggtca 254  Q
    |||||| || |||||||||| ||||    
T  2381414 accaacagtctccgattctccgtca 2381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 2380051 - 2380097
Alignment:
Q  122 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcct 168  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  2380051 tgttcaaatttaccagatgagttatgggaatacatcatcaaattcct 2380097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 2460727 - 2460600
Alignment:
Q  122 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttc 221  Q
    |||||| |||||||||| ||  |||||||  ||||| |||||||||||  || | || ||| | |||| || ||||||||||| |||||||||   || |    
T  2460727 tgttcacatttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaaccaccacactttcaaatctctctccatggtctccaaacagttcc 2460628  T
Q  222 tctccatcaccaaccgtttccgattctc 249  Q
    ||||||||||||| ||| ||||||||||    
T  2460627 tctccatcaccaatcgtctccgattctc 2460600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 2367678 - 2367732
Alignment:
Q  195 ctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 249  Q
    |||| |||||||||||||||   ||||||||||||||||||||| ||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 2390934 - 2390980
Alignment:
Q  122 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcct 168  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||||    
T  2390934 tgttcaaatttaccagatgagttgtgggaatacatcatcaaattcct 2390980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 2486366 - 2486305
Alignment:
Q  193 gtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctcggtca 254  Q
    |||||||||| ||||||| |||   ||||| ||||||||||||||| |||||||||||||||    
T  2486366 gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtca 2486305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 2525997 - 2525951
Alignment:
Q  123 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 169  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||    
T  2525997 gttcatatttaccagaggagttatgggaacacatcttcaaattcctc 2525951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 2536731 - 2536689
Alignment:
Q  123 gttcatatttaccagatgagttatgggaatgcatcatcaaatt 165  Q
    |||||||||||||||| ||||||||||||| |||| |||||||    
T  2536731 gttcatatttaccagaggagttatgggaatacatcttcaaatt 2536689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 2547656 - 2547530
Alignment:
Q  128 tatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctcca 227  Q
    |||||||||||||||||||||||   |||| |||||||||||   | | || |   | |||| || || ||||||||||||||||||   ||||| ||||    
T  2547656 tatttaccagatgagttatgggagcacatcttcaaattcctcaatgtctacgaggacgctttaaaatcgctctccatcgtctccaaacagtttctgtcca 2547557  T
Q  228 tcaccaaccgtttccgattctcggtca 254  Q
    ||||||||||| |||| ||||| ||||    
T  2547556 tcaccaaccgtctccggttctcagtca 2547530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5101951 - 5101997
Alignment:
Q  123 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 169  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  5101951 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctc 5101997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5106223 - 5106269
Alignment:
Q  123 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 169  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  5106223 gttcatatttaccggatgagttatgggagggcatcttcaaattcctc 5106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 12126937 - 12126883
Alignment:
Q  195 ctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 249  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||| ||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 39516987 - 39516855
Alignment:
Q  122 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttc 221  Q
    |||||||||||||| || ||  ||||||| |  ||| |||||||||||  ||| ||||||| | |||| |||||||||||||||||||||| |   ||||    
T  39516987 tgttcatatttaccggaggatatatgggagtctatcttcaaattcctcgacggtgacaaccacactttcaagtctctctccatcgtctccagacaatttc 39516888  T
Q  222 tctccatcaccaaccgtttccgattctcggtca 254  Q
    || |||||||||||||| || ||||||| ||||    
T  39516887 tcgccatcaccaaccgtctcagattctccgtca 39516855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 51763147 - 51763208
Alignment:
Q  188 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 249  Q
    ||||| |||||||||||||| ||||||   || |||||||||||| ||||||||||||||||    
T  51763147 ttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctc 51763208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 39252840 - 39252955
Alignment:
Q  130 tttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatc 229  Q
    ||||||||| |||||||||||||||||| | ||||||| |  ||  ||||| | | ||||||||||  ||||  ||||||||| |   ||||||||||||    
T  39252840 tttaccagaggagttatgggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctctttcgtctccatacagtttctctccatc 39252939  T
Q  230 accaaccgtttccgat 245  Q
    | ||||||| ||||||    
T  39252940 agcaaccgtctccgat 39252955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 32268825 - 32268773
Alignment:
Q  197 ctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 249  Q
    ||||||||||||||||||   || |||||||||||||||||| | ||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 15837956 - 15838019
Alignment:
Q  186 ctttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 249  Q
    |||| ||||| ||||| || |||||||||   ||||||||||||||||||||| ||||||||||    
T  15837956 ctttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctc 15838019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 52085607 - 52085555
Alignment:
Q  187 tttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtt 239  Q
    |||| ||||||| ||||||||||||||||  || || ||||||||||||||||    
T  52085607 tttggagtctctttccatcgtctccaaaaagttcctttccatcaccaaccgtt 52085555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University