View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_23 (Length: 396)

Name: NF15523_low_23
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_23
NF15523_low_23
[»] scaffold0103 (1 HSPs)
scaffold0103 (247-305)||(5626-5684)
[»] chr7 (1 HSPs)
chr7 (247-305)||(12808201-12808259)
[»] chr6 (2 HSPs)
chr6 (247-305)||(2634325-2634383)
chr6 (247-297)||(12084006-12084056)
[»] chr8 (1 HSPs)
chr8 (247-297)||(27261513-27261563)
[»] chr4 (1 HSPs)
chr4 (248-289)||(27897025-27897066)
[»] chr5 (2 HSPs)
chr5 (247-302)||(21837883-21837939)
chr5 (247-297)||(4807291-4807342)


Alignment Details
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 5626 - 5684
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagctttgtga 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5626 cagtatagttttcttctctttcctgcagtttgttcttatgcaagtagaaagctttgtga 5684  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 12808201 - 12808259
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagctttgtga 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12808201 cagtatagttttcttctctttcctgctgtttgttcttatgcaagtagaaagctttgtga 12808259  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 2634383 - 2634325
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagctttgtga 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2634383 cagtatagttttcttctctttcctgcagtttgttcttatgcaagtagaaagctttgtga 2634325  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 12084056 - 12084006
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaag 297  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12084056 cagtatagttttcttttctttcctgcggtttgttcttatgcaagtagaaag 12084006  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 27261563 - 27261513
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaag 297  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27261563 cagtatagttttcttttctttcctgcggtttgttcttatgcaagtagaaag 27261513  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 27897066 - 27897025
Alignment:
Q  248 agtatagttttcttctctttcctgcggtttgttcttatgcaa 289  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  27897066 agtatagttttcttttctttcctgcggtttgtttttatgcaa 27897025  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 21837883 - 21837939
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttc-ttatgcaagtagaaagctttg 302  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  21837883 cagtatagttttcttttctttgctgcggtttgttctttatgcaggtagaaagttttg 21837939  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 4807342 - 4807291
Alignment:
Q  247 cagtatagttttcttctctttcctgcggtttgttc-ttatgcaagtagaaag 297  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||    
T  4807342 cagtatagttttcttttctttgctgcggtttgttctttatgcaggtagaaag 4807291  T

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