View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_24 (Length: 396)

Name: NF15523_low_24
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_24
NF15523_low_24
[»] chr6 (4 HSPs)
chr6 (158-396)||(24137532-24137773)
chr6 (37-103)||(24138454-24138520)
chr6 (39-96)||(12696359-12696416)
chr6 (39-88)||(17327622-17327671)
[»] chr8 (2 HSPs)
chr8 (196-388)||(45148175-45148363)
chr8 (39-89)||(16641941-16641991)
[»] chr1 (1 HSPs)
chr1 (39-96)||(1486676-1486733)
[»] chr3 (1 HSPs)
chr3 (37-104)||(27505273-27505340)
[»] chr7 (1 HSPs)
chr7 (39-83)||(5409803-5409847)
[»] chr2 (1 HSPs)
chr2 (67-107)||(44860344-44860384)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 158 - 396
Target Start/End: Complemental strand, 24137773 - 24137532
Alignment:
Q  158 ccttatccatgcttcattttaaccaaaattgtcatcacct------ccttcaaacagtgtgcgtgaactataatctgagagggagaaatttaaataactt 251  Q
    |||||||| |||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24137773 ccttatccgtgcttcattttaaccaaaattgtcatcacctacacctccttcaaacagtgcgcgtgaactataatctgagagggagaaatttaaataactt 24137674  T
Q  252 cagtttttcaagttcagaaagcatgagaccaatatattgtcaaatgtaccaattccatttttattcacatcatgcgcaatggccactgcgacttggctct 351  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||    
T  24137673 cagttttttaagttcagaaagcatgagacccatatattgtcaaatgtaccaattccatttctattca---catgcgcaatggccactgcgacttggctct 24137577  T
Q  352 tcgtgtcttcaatgccatgccttacaagaacttgtttgttttcct 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24137576 tcgtgtcttcaatgccatgccttacaagaacttgtttgttttcct 24137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 24138520 - 24138454
Alignment:
Q  37 catgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatataaatacacttgattat 103  Q
    |||||| | ||||||||||||| || ||| |||||| ||||||| |||||||||||||||| |||||    
T  24138520 catgtctctgtgtcagacacgtgtcatgtccaacacaacaccgatacatataaatacacttaattat 24138454  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 12696416 - 12696359
Alignment:
Q  39 tgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatataaatacact 96  Q
    |||||||||||||||||||| |||||| | ||||||||| ||||| | ||| ||||||    
T  12696416 tgtcccggtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacact 12696359  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 17327622 - 17327671
Alignment:
Q  39 tgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatata 88  Q
    |||||| ||||||||||||| |||||| | ||||||||| ||||||||||    
T  17327622 tgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatata 17327671  T

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Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 196 - 388
Target Start/End: Original strand, 45148175 - 45148363
Alignment:
Q  196 ctccttcaaacagtgtgcgtgaactataatctgagagggagaaatttaaataacttcagtttttcaagttcagaaagcatgagaccaatatattgtcaaa 295  Q
    |||||||||||| || ||| |||||||||||||||||||| | ||||| |||||||| | ||||| |||||| |||||| |||||  ||| ||||| |||    
T  45148175 ctccttcaaacaatgcgcgcgaactataatctgagagggaaacatttacataacttctg-ttttccagttcaaaaagcaagagacacatacattgtgaaa 45148273  T
Q  296 tgtaccaattccatttttattcacatcatgcgcaatggccactgcgacttggctcttcgtgtcttcaatgccatgccttacaagaacttgttt 388  Q
    ||||||||||||||||  | |||   ||||||||||||||||||| | || ||||||||||||||| |  |||||||||||||||||||||||    
T  45148274 tgtaccaattccatttccactca---catgcgcaatggccactgccatttagctcttcgtgtcttcgactccatgccttacaagaacttgttt 45148363  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 16641941 - 16641991
Alignment:
Q  39 tgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatataa 89  Q
    ||||||||||| |||||| | |||||| | |||||||||||||||||||||    
T  16641941 tgtcccggtgttagacacatgtcgtgtccgacacgacaccgacacatataa 16641991  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1486676 - 1486733
Alignment:
Q  39 tgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatataaatacact 96  Q
    |||||||||||| ||||||| |||||| | ||||||||||||||| ||||| ||||||    
T  1486676 tgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacact 1486733  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 27505340 - 27505273
Alignment:
Q  37 catgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacacatataaatacacttgattatg 104  Q
    |||||||||||||| ||||||| ||||||   ||||||||||||||| | ||| ||||||| ||||||    
T  27505340 catgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacacttaattatg 27505273  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 5409803 - 5409847
Alignment:
Q  39 tgtcccggtgtcagacacgtctcgtgttcaacacgacaccgacac 83  Q
    |||||||||||| ||||||| |||||| | |||||||||||||||    
T  5409803 tgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacac 5409847  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 44860384 - 44860344
Alignment:
Q  67 caacacgacaccgacacatataaatacacttgattatgcga 107  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  44860384 caacacgacaccgacacatataattacactgaattatgcga 44860344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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