View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_25 (Length: 393)
Name: NF15523_low_25
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 1689734 - 1690084
Alignment:
| Q |
18 |
agaaaaagctttaacaattttagttatttaatcgggggaattccttgctatttctctgnnnnnnnattttagattctgcatttaacttatgacattggag |
117 |
Q |
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| T |
1689734 |
agaaaaagctttaacaatcttagttatttaatcgggggaattccctgctattt-----------------agattctgcatttaacttatgacattggag |
1689816 |
T |
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| Q |
118 |
cttatgtatgatagcagaaaccttgggaagatagtaactgaggcatgtgcatttaacttatgacattagagcttatctatcaaataatgcaggaagatca |
217 |
Q |
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| T |
1689817 |
cttatgtatgatagcagaaaccttgggaagatagtaactgaggcatgtgcatttaacttatgacattagagcttatctatcaaataatgcaggaagatca |
1689916 |
T |
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| Q |
218 |
aaaagcaat----actaattatgtgatattcatcatcatacttacctgattatttcccttaatttcccattctttttgatgaatctgcagga-nnnnnnn |
312 |
Q |
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| T |
1689917 |
aaaagcaataagcaatactaatgtcatattcatcatcatacttacctgattatttcccttaatttcccattctttttgatgaatctgcaggatttttttt |
1690016 |
T |
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| Q |
313 |
ccttctatagttattagatcctgtgaaaaattgagacatgtttgttcttctatgtacatttgtatcctatgc |
384 |
Q |
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| T |
1690017 |
ccttctatagtta----atcctgtgaaaaattgagacatgtttgttcttttatgtacatttgtatcctatgc |
1690084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 43337416 - 43337480
Alignment:
| Q |
193 |
tctatcaaataatgcaggaagatcaaaaagcaatactaattatgtgatattcatcatcatacttacct |
260 |
Q |
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| T |
43337416 |
tctatcaaataatgcaggaagatcaaaaagcaatacaa---atgtcatattcatcatcctactcacct |
43337480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 32782126 - 32782185
Alignment:
| Q |
121 |
atgtatgatagcagaaaccttgggaagatagtaactgaggcatgtgcatttaacttatga |
180 |
Q |
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| T |
32782126 |
atgtatggtagcagaaatgttggaaagatagcaactgagtcatgtgcatttaacttatga |
32782185 |
T |
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