View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_27 (Length: 385)
Name: NF15523_low_27
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 592566 - 592195
Alignment:
| Q |
1 |
caacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctga |
100 |
Q |
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| T |
592566 |
caacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctga |
592467 |
T |
|
| Q |
101 |
gacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacagga |
200 |
Q |
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| T |
592466 |
gacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaaccaaatttacagga |
592367 |
T |
|
| Q |
201 |
ctatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaa |
300 |
Q |
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| T |
592366 |
ctatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgccttttgggtcgtgaa |
592267 |
T |
|
| Q |
301 |
gttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagt |
372 |
Q |
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| T |
592266 |
gttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataatggaatgcttccaatcagt |
592195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 579862 - 580232
Alignment:
| Q |
1 |
caacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
579862 |
caacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctga |
579961 |
T |
|
| Q |
101 |
gacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacagga |
200 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||| |
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| T |
579962 |
gacttgattgtttgtttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgttattt-ctcaaacatgaaccaaatttacagga |
580060 |
T |
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| Q |
201 |
ctatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
580061 |
ctatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaa |
580160 |
T |
|
| Q |
301 |
gttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
580161 |
gttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagt |
580232 |
T |
|
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