View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_28 (Length: 382)
Name: NF15523_low_28
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 4960698 - 4961041
Alignment:
| Q |
18 |
atgcatagcatccaagacattggaaacactcccaaaatgtgtgatacagcgtgttttttaagggaaagaagggttttggggtaacacattttattcaatt |
117 |
Q |
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| T |
4960698 |
atgcattgcatccaagacattggaaacactcccaaaatgtg--atacaacgtgttttttaagggaaagaagggttttggggtaacacattttattcaatt |
4960795 |
T |
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| Q |
118 |
gaaatccaaagttttttcttgttctaagtgctacactgcaacctttagaaattaaatatccagcaaatcttatccaccacaccaacttgactctcggata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4960796 |
gaaatccaaagttttttcttgttctaagtgctacactgcaacctttagaaattaaatatccagcaaatcttatccaccac--caacttgactctcggata |
4960893 |
T |
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| Q |
218 |
aataaactcaaaaataggtagttaaactgtttgaaacgcagaagaaaccctaaaactcaaatttggattttctccaagatctcatgcaaataaacgtagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4960894 |
aataaactcaaaaataggtagttaaactgtttgaaacgcagaagaaaccctaaaactcaaatttggattttctccaagatctcatgcaaataaacgtaga |
4960993 |
T |
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| Q |
318 |
agaaaccctaaaatttaaatttccattgttgttcactccaaatttcag |
365 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4960994 |
agaaaccctaaaatttaaatttccattgttgttcgctccaaatttcag |
4961041 |
T |
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