View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_29 (Length: 373)
Name: NF15523_low_29
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 4961057 - 4961423
Alignment:
| Q |
1 |
ttgggatcatatgatatttttatacatcaaaatatcaagtgaaaattaaaaacatatgatattttgatagaacgatcacgattgtgctctattacatgaa |
100 |
Q |
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| T |
4961057 |
ttgggatcatatgttatttttatacatcaaaatatcaagtgaaaattggaaacatatgatattttaatagaacgaccacgattgtgctctattgcatgaa |
4961156 |
T |
|
| Q |
101 |
tgcagagaatttgacttcgagagcctaacattccccgttaaccaatccaataannnnnnnacttttcaacaatatactataattaaaagtaagtattaag |
200 |
Q |
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| T |
4961157 |
tgcagagaatctgacttcgagagcctaacattccccgttaaccaataaaataatttttttgcttttcaacaatatactataattaaaagtaagtattaag |
4961256 |
T |
|
| Q |
201 |
cagattataactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcgtgctctttaatgattaatctaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4961257 |
cagattataactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcgtgctctttaatgattaatctaatg |
4961356 |
T |
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| Q |
301 |
ggataacaaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctac |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4961357 |
ggataacaaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctac |
4961423 |
T |
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