View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_3 (Length: 667)
Name: NF15523_low_3
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 16578983 - 16578598
Alignment:
| Q |
1 |
acacttccaccaacaacttgcccttgtccaccggctaagtacactgttagtccggttgcgcctggaggagcaggtcccggtagaaaagctccggttaacg |
100 |
Q |
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| T |
16578983 |
acacttccaccaacaacttgcccttgtccaccggctaagtacactgtgagtccggttgcgcctggaggagcaggtcctggtagaaaagctccggttaatg |
16578884 |
T |
|
| Q |
101 |
atagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgctggttgtctaagggtaacatttgcaactgatccactaccgcttagaacaca |
200 |
Q |
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| T |
16578883 |
atagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaacatttgcaactgatccactaccgcttagaacaca |
16578784 |
T |
|
| Q |
201 |
aaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactg |
300 |
Q |
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| T |
16578783 |
aaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactg |
16578684 |
T |
|
| Q |
301 |
tctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc |
386 |
Q |
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| T |
16578683 |
tctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc |
16578598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 448 - 649
Target Start/End: Complemental strand, 16578536 - 16578336
Alignment:
| Q |
448 |
ttggtttcgttgatgaaaagttcggtgtggggacgtttgttcataaaaccaggtggattacctgacgggtggtggggatgatccaccaccccaggtaatc |
547 |
Q |
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| T |
16578536 |
ttggtttcgttgatgaaaagttcggtgtggggacgtttgttcataaaaccaggtggattacctgacgggtggtggggatgatccaccaccccaggtaatc |
16578437 |
T |
|
| Q |
548 |
ctacctgatgtcctgtccaccacggattagccagaacttctgttgnnnnnnnnacggaaaatacaaaagatactcaaacccaaaatataaaggtaagaaa |
647 |
Q |
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| T |
16578436 |
ctacctgatgtcctgtccaccacggattagccagaacttctgttg-tttttttacggaaaatacaaaagatactcaaacccaaaatataaaggtaagaaa |
16578338 |
T |
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| Q |
648 |
at |
649 |
Q |
| |
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|| |
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| T |
16578337 |
at |
16578336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 39 - 386
Target Start/End: Original strand, 32802950 - 32803297
Alignment:
| Q |
39 |
gtacactgttagtccggttgcgcctggaggagcaggtcccggtagaaaagctccggttaacgatagaatatcaaaccttccatgaagtgctacaacagct |
138 |
Q |
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||||||||| || || |||| ||||| |||||||| || |||||||| | |||||||| || | ||| |||||||| ||||||||||||||||| || |
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| T |
32802950 |
gtacactgtaagaccagttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggca |
32803049 |
T |
|
| Q |
139 |
cctggtgctgctggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacac |
238 |
Q |
| |
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|| || |||| ||||||||||| |||||||| || || || ||||| || || ||||||||||| |||||||| ||||| ||||| || || ||||||| |
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| T |
32803050 |
ccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccgcgttgacgcctccttgcgaattgtgctacac |
32803149 |
T |
|
| Q |
239 |
tttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttgttacgaagattggtggttttggtttgttttt |
338 |
Q |
| |
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|||| |||| ||| ||||| || ||| ||||| |||||||| |||| | |||||| || ||||||||||| ||||| |||||||||||| ||||||| |
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| T |
32803150 |
tttctgctatatcagctccaccggctacctccatgacatggctcttcaaagcatttgggctatctcttgttacaaagataggtggttttggtctgttttt |
32803249 |
T |
|
| Q |
339 |
tgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc |
386 |
Q |
| |
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|| || |||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
32803250 |
ggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgc |
32803297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 35465529 - 35465572
Alignment:
| Q |
301 |
tctcttgttacgaagattggtggttttggtttgttttttgaacc |
344 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
35465529 |
tctcttgttatgaatattggtggttttggtttgttttttgaacc |
35465572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 32809703 - 32809752
Alignment:
| Q |
332 |
tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttca |
381 |
Q |
| |
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||||||| || || |||||||||||||||||||||||||| ||||||||| |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttca |
32809752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 13212844 - 13212892
Alignment:
| Q |
319 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
367 |
Q |
| |
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|||||||||||||||||||| ||||| | |||||||||||||||||||| |
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| T |
13212844 |
ggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
319 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
367 |
Q |
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|||||||||||||||||||| || || | |||||||||||||||||||| |
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| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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