View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_31 (Length: 367)

Name: NF15523_low_31
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_31
NF15523_low_31
[»] chr2 (22 HSPs)
chr2 (211-355)||(28670248-28670392)
chr2 (211-355)||(28639382-28639526)
chr2 (211-347)||(28648689-28648825)
chr2 (231-347)||(28674172-28674288)
chr2 (231-335)||(28690526-28690630)
chr2 (29-88)||(4772823-4772882)
chr2 (29-88)||(8044601-8044660)
chr2 (29-88)||(29676284-29676343)
chr2 (29-88)||(29695394-29695453)
chr2 (29-88)||(32667173-32667232)
chr2 (31-88)||(10542118-10542175)
chr2 (29-88)||(883656-883715)
chr2 (29-76)||(10570925-10570972)
chr2 (29-88)||(17727394-17727453)
chr2 (38-88)||(4877457-4877507)
chr2 (31-88)||(12419830-12419887)
chr2 (31-88)||(12431890-12431947)
chr2 (31-76)||(25621352-25621397)
chr2 (39-88)||(33277400-33277449)
chr2 (31-88)||(39108080-39108137)
chr2 (31-88)||(39386662-39386719)
chr2 (36-88)||(26847297-26847349)
[»] chr7 (24 HSPs)
chr7 (27-86)||(4258261-4258320)
chr7 (29-87)||(4258056-4258114)
chr7 (29-88)||(6783028-6783087)
chr7 (33-88)||(6813133-6813188)
chr7 (29-88)||(16565088-16565147)
chr7 (29-88)||(16600515-16600574)
chr7 (31-88)||(6782818-6782875)
chr7 (31-88)||(6813338-6813395)
chr7 (31-88)||(10903539-10903596)
chr7 (31-88)||(21557008-21557065)
chr7 (31-88)||(35866694-35866751)
chr7 (29-88)||(5266349-5266408)
chr7 (29-88)||(10903332-10903391)
chr7 (29-88)||(23390580-23390639)
chr7 (29-88)||(33834145-33834204)
chr7 (29-88)||(48113987-48114046)
chr7 (30-88)||(31357730-31357788)
chr7 (31-88)||(5775874-5775931)
chr7 (29-86)||(6751562-6751619)
chr7 (31-88)||(16564886-16564943)
chr7 (31-88)||(16600719-16600776)
chr7 (31-88)||(23821731-23821788)
chr7 (31-88)||(40703914-40703971)
chr7 (102-142)||(2938249-2938289)
[»] chr5 (13 HSPs)
chr5 (29-88)||(18107533-18107592)
chr5 (29-88)||(1893778-1893837)
chr5 (31-86)||(4563748-4563803)
chr5 (31-85)||(20720608-20720662)
chr5 (31-88)||(36878318-36878375)
chr5 (31-76)||(37781911-37781956)
chr5 (31-88)||(39268010-39268067)
chr5 (29-76)||(37656799-37656846)
chr5 (29-88)||(39268216-39268275)
chr5 (29-88)||(43490311-43490370)
chr5 (31-88)||(13413576-13413633)
chr5 (31-88)||(38376723-38376780)
chr5 (31-71)||(35656914-35656954)
[»] chr3 (17 HSPs)
chr3 (30-88)||(50338437-50338495)
chr3 (29-86)||(27177607-27177664)
chr3 (28-88)||(26915105-26915165)
chr3 (28-76)||(35358520-35358568)
chr3 (29-88)||(27177402-27177461)
chr3 (29-88)||(40230489-40230548)
chr3 (29-88)||(50692516-50692575)
chr3 (46-88)||(25399284-25399326)
chr3 (31-89)||(32034083-32034141)
chr3 (27-84)||(1715143-1715200)
chr3 (28-77)||(29369790-29369839)
chr3 (31-88)||(38421977-38422034)
chr3 (31-88)||(40926446-40926503)
chr3 (31-76)||(51338508-51338553)
chr3 (31-76)||(53640239-53640284)
chr3 (28-88)||(25578736-25578795)
chr3 (28-88)||(44367568-44367628)
[»] chr8 (13 HSPs)
chr8 (31-88)||(33435671-33435728)
chr8 (29-77)||(30065981-30066029)
chr8 (29-88)||(33435873-33435932)
chr8 (31-88)||(30176519-30176576)
chr8 (31-88)||(43599303-43599360)
chr8 (29-76)||(15857169-15857216)
chr8 (29-88)||(43901072-43901131)
chr8 (276-326)||(2055265-2055315)
chr8 (38-88)||(31711797-31711847)
chr8 (31-88)||(12941562-12941619)
chr8 (29-86)||(39705771-39705828)
chr8 (36-88)||(30117491-30117543)
chr8 (29-77)||(42447252-42447300)
[»] chr6 (9 HSPs)
chr6 (31-88)||(15293929-15293986)
chr6 (29-88)||(15102680-15102739)
chr6 (29-88)||(15102807-15102865)
chr6 (31-88)||(11316835-11316892)
chr6 (29-66)||(13692245-13692282)
chr6 (29-88)||(2923011-2923070)
chr6 (29-88)||(11317038-11317097)
chr6 (30-88)||(26394542-26394600)
chr6 (28-77)||(12124760-12124809)
[»] chr4 (23 HSPs)
chr4 (32-88)||(3055776-3055832)
chr4 (29-88)||(28245983-28246042)
chr4 (31-88)||(26806503-26806560)
chr4 (31-88)||(28497269-28497326)
chr4 (29-88)||(1923046-1923105)
chr4 (88-143)||(6218471-6218526)
chr4 (29-88)||(8305010-8305069)
chr4 (29-84)||(17076999-17077054)
chr4 (29-84)||(17077203-17077258)
chr4 (29-88)||(29113439-29113498)
chr4 (29-88)||(33629911-33629970)
chr4 (29-76)||(39110897-39110944)
chr4 (29-88)||(52827287-52827346)
chr4 (28-87)||(53720726-53720785)
chr4 (30-88)||(3640197-3640255)
chr4 (38-88)||(12879514-12879564)
chr4 (28-66)||(41743227-41743265)
chr4 (29-86)||(3640446-3640503)
chr4 (31-76)||(5065845-5065890)
chr4 (31-88)||(25753660-25753717)
chr4 (31-88)||(43943665-43943722)
chr4 (31-88)||(49380935-49380992)
chr4 (31-71)||(3047474-3047514)
[»] chr1 (15 HSPs)
chr1 (28-88)||(42845076-42845136)
chr1 (31-65)||(49895145-49895179)
chr1 (31-88)||(38871210-38871267)
chr1 (31-88)||(45395544-45395601)
chr1 (31-88)||(52921522-52921579)
chr1 (29-88)||(36332301-36332360)
chr1 (33-88)||(49828665-49828720)
chr1 (223-305)||(33771238-33771320)
chr1 (30-88)||(39649139-39649197)
chr1 (31-88)||(1233918-1233975)
chr1 (31-88)||(13959394-13959451)
chr1 (39-88)||(40315913-40315962)
chr1 (31-87)||(5222686-5222742)
chr1 (29-65)||(22892499-22892535)
chr1 (29-77)||(47377825-47377873)
[»] scaffold1138 (1 HSPs)
scaffold1138 (38-90)||(1926-1978)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 28670248 - 28670392
Alignment:
Q  211 catgatgaactcacctggagaagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttgtaagc 310  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  28670248 catgatgtactcacctgtagaagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccactgattgtcatgaagaatttgtaagc 28670347  T
Q  311 caccaatatgatcttgcaaaagtattgtcataaagctggcatctg 355  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||    
T  28670348 caccaatatgatcttgcaaaagtactgtaataaagctagcatctg 28670392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 28639382 - 28639526
Alignment:
Q  211 catgatgaactcacctggagaagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttgtaagc 310  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  28639382 catgatgaactcacctgtagaagatctccgacgttcactacaagagctccatgaatgggagaaacatcaatccattgattgtcatgaagaacttctaagc 28639481  T
Q  311 caccaatatgatcttgcaaaagtattgtcataaagctggcatctg 355  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||    
T  28639482 caccaatatgatcttgcaaaactattgtaataaagctagcatctg 28639526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 211 - 347
Target Start/End: Original strand, 28648689 - 28648825
Alignment:
Q  211 catgatgaactcacctggagaagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttgtaagc 310  Q
    |||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||    
T  28648689 catgatgaactcacttgaagaagatccccaacgttcactacaagagctccatgaatgggagctacatcaatccattgattgttatgaagaacttctaagc 28648788  T
Q  311 caccaatatgatcttgcaaaagtattgtcataaagct 347  Q
    |||||||||||||||||||||||||||| ||||||||    
T  28648789 caccaatatgatcttgcaaaagtattgtaataaagct 28648825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 28674172 - 28674288
Alignment:
Q  231 aagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttgtaagccaccaatatgatcttgcaaa 330  Q
    |||||| ||||||||||||||||| || ||||||  |||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||| |||| |    
T  28674172 aagatccccaatgttcactacaagggcaccatgagagggaggcacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcaga 28674271  T
Q  331 agtattgtcataaagct 347  Q
    |||||||||||||||||    
T  28674272 agtattgtcataaagct 28674288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 28690526 - 28690630
Alignment:
Q  231 aagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttgtaagccaccaatatgatcttgcaaa 330  Q
    |||||| |||||||| || |||||||||||||  || |||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  28690526 aagatcaccaatgtttacgacaagagctccattgataggagttacatcaatccattgatcgtcatgaagaacttgtaagccgccaatatgatcttgcaaa 28690625  T
Q  331 agtat 335  Q
    |||||    
T  28690626 agtat 28690630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 4772882 - 4772823
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||| | |||||||||||| |||||||||||||||| |||| ||||| ||||||||||    
T  4772882 tgtattagaaaaaactcaagtttcacatcagatagatatgactcttgataagagtttata 4772823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 8044660 - 8044601
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| | ||||||||||||| |||| ||||| ||||||||||    
T  8044660 tgtattgggaaaaacccaagtcccgcatcagatagataagactcttgataagagtttata 8044601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 29676284 - 29676343
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || |||||||||| |||||||| |||| ||||| ||||||||||    
T  29676284 tgtattgggaaaaacacatgtctcacatcggatagataagactcttgataagagtttata 29676343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 29695453 - 29695394
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| ||||||||||||| |||||||| |||| ||||  ||||||||||    
T  29695453 tgtattgggaaaaacccaagtctcacatcggatagataagactcttgagaagagtttata 29695394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 32667173 - 32667232
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||  ||||| ||||||||||||||| |||| ||||| ||||||||||    
T  32667173 tgtattgggaaaaaccgaagtcccacatcagatagataagactcttgataagagtttata 32667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 10542175 - 10542118
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||| ||||| |||||||| | ||| ||||| ||||||||||    
T  10542175 tattgggaaaaactcaagtcccacattagatagattgaactcttgataagagtttata 10542118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 883715 - 883656
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  883715 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 883656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 10570925 - 10570972
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    ||||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  10570925 tgtattgggaaaaacccaagtcccacatcagatagataagactcttga 10570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 17727394 - 17727453
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  17727394 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 17727453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 4877507 - 4877457
Alignment:
Q  38 aaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||||||||||||||| | || ||| | ||||||||||    
T  4877507 aaaaactcaagtctcacatcagatagataagtctcttgctaagagtttata 4877457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 12419830 - 12419887
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  12419830 tattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 12419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 12431890 - 12431947
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  12431890 tattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 12431947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 25621397 - 25621352
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    ||||||||||||| ||||||||||||| |||||||| |||| ||||    
T  25621397 tattgggaaaaacccaagtctcacatcggatagataagactcttga 25621352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 33277449 - 33277400
Alignment:
Q  39 aaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||| ||||||||| |||| || || ||||||||||    
T  33277449 aaaactcaagtctcacataagatagatatgacttttcataagagtttata 33277400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 39108080 - 39108137
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||| ||||||| ||||||||||| ||| || | ||||| ||||||||||    
T  39108080 tattgggaaaaattcaagtcccacatcagatatataagaatcttgataagagtttata 39108137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 39386662 - 39386719
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  39386662 tattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttata 39386719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 26847349 - 26847297
Alignment:
Q  36 ggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||| |||||| |||||  ||||||||||||| ||||| ||||||||||    
T  26847349 ggaaaaacccaagtcccacattggatagataggactcttgataagagtttata 26847297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4258320 - 4258261
Alignment:
Q  27 aatgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    |||||||||||||||||||||||| |||||| |||||||| |||| ||||| ||||||||    
T  4258320 aatgtattgggaaaaactcaagtcccacatcggatagataagactcttgataagagttta 4258261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 4258114 - 4258056
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttat 87  Q
    ||||||||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||    
T  4258114 tgtattgggaaaaacccaagtctcacatcggatagataagactcttgataagagtttat 4258056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 6783028 - 6783087
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| ||||||||||||| |||||||| |||| ||||  ||||||||||    
T  6783028 tgtattgggaaaaacccaagtctcacatcggatagataagactcttgagaagagtttata 6783087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 6813188 - 6813133
Alignment:
Q  33 ttgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||| |||||| |||||| ||||||| ||||| ||||||||||||||||    
T  6813188 ttgggaaaaacacaagtcccacatcggatagatgggactcttgatgagagtttata 6813133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 16565088 - 16565147
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  16565088 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 16565147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 16600574 - 16600515
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  16600574 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 16600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 6782818 - 6782875
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| ||||||||||||| |||||||| |||| ||||  ||||||||||    
T  6782818 tattgggaaaaacccaagtctcacatcggatagataagactcttgagaagagtttata 6782875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 6813395 - 6813338
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||| | |||||| | |||||||||||| ||||| ||||||||||||||||    
T  6813395 tattgggaaaaccccaagtcccgcatcagatagatgggactcttgatgagagtttata 6813338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 10903596 - 10903539
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||| ||| |||||| |||||||| |||| ||||| ||||||||||    
T  10903596 tattgggaaaaactcatgtcccacatcggatagataagactcttgataagagtttata 10903539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 21557008 - 21557065
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||| ||||||||||||| |||||| ||||||||| ||| ||||| ||||||||||    
T  21557008 tattggaaaaaactcaagtcccacatcggatagatagaactcttgataagagtttata 21557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 35866751 - 35866694
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  35866751 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 35866694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 5266349 - 5266408
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| ||||||||||||||| |||| ||||| |||| |||||    
T  5266349 tgtattgggaaaaacccatgtcccacatcagatagataagactcttgataagagattata 5266408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 10903391 - 10903332
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  10903391 tgtattgggaaaaacacatgtcccacatcggatagataagactcttgataagagtttata 10903332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 23390580 - 23390639
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  23390580 tgtattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttata 23390639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 33834145 - 33834204
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||  || ||| ||||||||||||||| |||| ||||| ||||||||||    
T  33834145 tgtattgggaaaaatccatgtcccacatcagatagataagactcttgataagagtttata 33834204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 48113987 - 48114046
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||| ||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  48113987 tgtattgggaataacccaagtcccacatcggatagataagactcttgataagagtttata 48114046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 31357788 - 31357730
Alignment:
Q  30 gtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  31357788 gtattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttata 31357730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 5775874 - 5775931
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||| ||||||  ||||||  |||| || |||||||||||||    
T  5775874 tattgggaaaaactcaagtcccacatcgcatagatgagactcttaatgagagtttata 5775931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 6751619 - 6751562
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    ||||||||||||||| |||||| || ||| |||||||  |||| ||||||||||||||    
T  6751619 tgtattgggaaaaacccaagtcccaaatcggatagatgagactcttgatgagagttta 6751562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 16564886 - 16564943
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| || || ||||||||||    
T  16564886 tattgggaaaaacccaagtcccacatcggatagataagactcttaataagagtttata 16564943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 16600776 - 16600719
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| || || ||||||||||    
T  16600776 tattgggaaaaacccaagtcccacatcggatagataagactcttaataagagtttata 16600719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 23821788 - 23821731
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| ||||| ||||||| |||| ||| |||| ||||||| ||||||||    
T  23821788 tattgggaaaaacccaagtttcacatcggataaataagacttttgatgacagtttata 23821731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 40703971 - 40703914
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||| |||||| |||||||| |||||| |||||||  |||| ||||||||||||||||    
T  40703971 tatttggaaaagctcaagtcccacatcggatagatgagactcttgatgagagtttata 40703914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 2938249 - 2938289
Alignment:
Q  102 ttttatgaaattgtattagactcagctacgatttctaagac 142  Q
    |||||||||||||||||| ||||| | ||||||||||||||    
T  2938249 ttttatgaaattgtattaaactcaaccacgatttctaagac 2938289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 18107592 - 18107533
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||||||    
T  18107592 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgatgagagtttata 18107533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 1893778 - 1893837
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||||||||||| ||  |||||||| |||| ||||| ||||||||||    
T  1893778 tgtattgggaaaaactcaagtctcatattggatagatacgactcttgataagagtttata 1893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 4563803 - 4563748
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    |||||||||||||||| |||||||||| |||||||| |||| ||||| ||||||||    
T  4563803 tattgggaaaaactcatgtctcacatcggatagataagacttttgataagagttta 4563748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 20720662 - 20720608
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttt 85  Q
    |||||||||||||||||||| ||||||||||||||| || | ||||| |||||||    
T  20720662 tattgggaaaaactcaagtcccacatcagatagataagattcttgataagagttt 20720608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 36878318 - 36878375
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||  ||||| ||||||||||||||| |||| ||||| ||||||||||    
T  36878318 tattgggaaaaaccaaagtcccacatcagatagataagacttttgataagagtttata 36878375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 37781956 - 37781911
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||    
T  37781956 tattgggaaaaactcaagtctcacatcggatagataagactcttga 37781911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 39268010 - 39268067
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  39268010 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 39268067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 37656846 - 37656799
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    |||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  37656846 tgtattggaaaaaactcaagtctcacatcggatagataagactcttga 37656799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 39268216 - 39268275
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| ||||||||  ||| ||||| ||||||||||    
T  39268216 tgtattgggaaaaacccaagtcccacatcggatagataaaactcttgataagagtttata 39268275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 43490370 - 43490311
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  43490370 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 43490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 13413576 - 13413633
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| ||||||| ||||||| |||| ||||  ||||||||||    
T  13413576 tattgggaaaaacccaagtcccacatcaaatagataagactcttgagaagagtttata 13413633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 38376723 - 38376780
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  38376723 tattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 38376780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 35656914 - 35656954
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggact 71  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  35656914 tattgggaaaaacccaagtctcacattggatagataggact 35656954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 50338495 - 50338437
Alignment:
Q  30 gtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  50338495 gtattgagaaaaactcaagtctcatatcagatagataagactcttgataagagtttata 50338437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 27177607 - 27177664
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    |||||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||    
T  27177607 tgtattggaaaaaactcaagtctcacatgagatagataagactcttgatcagagttta 27177664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 26915105 - 26915165
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||| ||||||||||||| || |||||||||||| |||| ||||| ||||||||||    
T  26915105 atgtattggaaaaaactcaagtcccagatcagatagataagactcttgataagagtttata 26915165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 35358568 - 35358520
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    |||||||||||||||  |||||||||||||||||||||| |||| ||||    
T  35358568 atgtattgggaaaaatccaagtctcacatcagatagataagactcttga 35358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 27177402 - 27177461
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||| |||||||||| |||||||||||||||||  |||| || || ||||||||||    
T  27177402 tgtattggaaaaaactcaaatctcacatcagatagatgagactctttataagagtttata 27177461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 40230548 - 40230489
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||  |||||| |||||||  |||| ||||||||||||||||    
T  40230548 tgtattgggaaaaacccaagttccacatcggatagatgagactcttgatgagagtttata 40230489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 50692516 - 50692575
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||| | |||| ||||| ||||||||||    
T  50692516 tgtattgggaaaaacccaagtcccacatcggatagacaagactcttgataagagtttata 50692575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 25399284 - 25399326
Alignment:
Q  46 aagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||    
T  25399284 aagtctcacatcagattgataggactcttgatcagagtttata 25399326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 32034083 - 32034141
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttatac 89  Q
    |||||||||||||||| ||| ||||||  ||||||| |||| ||||| |||||||||||    
T  32034083 tattgggaaaaactcatgtcccacatcgaatagataagactcttgataagagtttatac 32034141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 1715200 - 1715143
Alignment:
Q  27 aatgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtt 84  Q
    ||||| |||||||||||  ||||||||||||||| ||||| |||| ||||| ||||||    
T  1715200 aatgtgttgggaaaaaccgaagtctcacatcagacagataagactcttgataagagtt 1715143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 29369790 - 29369839
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgat 77  Q
    |||||||||||||||| |||||| |||||| |||||||| |||| |||||    
T  29369790 atgtattgggaaaaacccaagtcccacatcggatagataagactcttgat 29369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 38421977 - 38422034
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||  ||||| |||||| |||||||| ||||||| || ||||||||||    
T  38421977 tattgggaaaaacctaagtcccacatcggatagataagactattaataagagtttata 38422034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 40926446 - 40926503
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  40926446 tattgggaaaaacacatgtcccacatcggatagataagactcttgataagagtttata 40926503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 51338553 - 51338508
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    ||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  51338553 tattgggaaaaacccaagtcccacatcagatagataagactcttga 51338508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 53640284 - 53640239
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    ||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  53640284 tattgggaaaaacccaagtcccacatcagatagataagactcttga 53640239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 25578795 - 25578736
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  25578795 atgtattgggaaaaacccatgtcccacatcggatagataagact-ttgataagagtttata 25578736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 44367568 - 44367628
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||  | |||||| |||||||||||| |||| ||||  ||||||||||    
T  44367568 atgtattgggaaaaaccgatgtctcatatcagatagataagactcttgagaagagtttata 44367628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 33435671 - 33435728
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||||||||||||| ||||||||  ||| ||||| ||||||||||    
T  33435671 tattgggaaaaactcaagtctcacatcggatagataaaactcttgataagagtttata 33435728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 30065981 - 30066029
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgat 77  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  30065981 tgtattgggaaaaactcaagtcccacatcagatagataagactcttgat 30066029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 33435873 - 33435932
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  33435873 tgtattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 33435932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 30176576 - 30176519
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||| |||||| ||||||   |||| ||||||||||||||||    
T  30176576 tattgggaaaaactcaagtcccacatcggatagacgagactcttgatgagagtttata 30176519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 43599303 - 43599360
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||| |||||| |||||||| |||| ||||  ||||||||||    
T  43599303 tattgggaaaaactcaagtcccacatcggatagataagactcttgagaagagtttata 43599360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 15857169 - 15857216
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    |||||||||||||||||||||| |||||| |||||||| |||| ||||    
T  15857169 tgtattgggaaaaactcaagtcccacatcggatagataagactcttga 15857216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 43901131 - 43901072
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| |||||| |||||||| |||| ||||| ||||||||||    
T  43901131 tgtattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttata 43901072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 2055315 - 2055265
Alignment:
Q  276 atcaatccattgattgtcataaagaacttgtaagccaccaatatgatcttg 326  Q
    ||||||||||| || ||||||||||||||| | |||||||||||| |||||    
T  2055315 atcaatccatttatcgtcataaagaacttggaggccaccaatatggtcttg 2055265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 31711847 - 31711797
Alignment:
Q  38 aaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||||||||||||||| | || ||| | ||||||||||    
T  31711847 aaaaactcaagtctcacatcagatagataagtctcttgctaagagtttata 31711797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 12941562 - 12941619
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||  ||||||||||||||  ||||  |||||||||||||||    
T  12941562 tattgggaaaaacccaagtaccacatcagatagatgagactcatgatgagagtttata 12941619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 39705828 - 39705771
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    |||||||||||||| ||| |||||||||| |||| ||| |||| ||||| ||||||||    
T  39705828 tgtattgggaaaaattcatgtctcacatcggataaataagactcttgataagagttta 39705771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 30117543 - 30117491
Alignment:
Q  36 ggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||| |||||| |||||| |||||||  |||| ||||||||||||||||    
T  30117543 ggaaaaacccaagtcccacatcggatagatgagactcttgatgagagtttata 30117491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 42447252 - 42447300
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgat 77  Q
    |||||||| ||||||||||||| ||||||| ||||||| |||| |||||    
T  42447252 tgtattggaaaaaactcaagtcccacatcaaatagatacgactcttgat 42447300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 15293986 - 15293929
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||||| ||||||||||||  || | ||||||||||||||||    
T  15293986 tattgggaaaaactcaagtctcgcatcagatagattagattcttgatgagagtttata 15293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 15102739 - 15102680
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| ||||||| ||||||  |||| ||||||||||||||||    
T  15102739 tgtattgggaaaaacccaagtcccacatcaaatagatgagactcttgatgagagtttata 15102680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 15102865 - 15102807
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| ||||||||||||||  |||| ||||||||||||||||    
T  15102865 tgtattgggaaaaacccaagtc-cacatcagatagatgagactcttgatgagagtttata 15102807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 11316835 - 11316892
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||  |||||| |||||||  |||| ||||||||||||||||    
T  11316835 tattgggaaaaactcaagttccacatcggatagatgagactcttgatgagagtttata 11316892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 13692282 - 13692245
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagata 66  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  13692282 tgtattgggaaaaactcaagtctcacatcggatagata 13692245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 2923070 - 2923011
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||| ||| ||| || |||||||| |||| ||||| ||||||||||    
T  2923070 tgtattgggaaaaactcatgtcccacgtcggatagatatgactcttgataagagtttata 2923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11317038 - 11317097
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||   ||| ||||||||||||||||    
T  11317038 tgtattgggaaaaacccaagtcccacatcggatagatgaaactcttgatgagagtttata 11317097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 26394542 - 26394600
Alignment:
Q  30 gtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||| ||  |||||| |||||||| |||| ||||| ||||||||||    
T  26394542 gtattgggaaaaactcatgttccacatcggatagataagactcttgataagagtttata 26394600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 12124809 - 12124760
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgat 77  Q
    ||||||||||||||||  ||||| ||||||||||||||  ||||||||||    
T  12124809 atgtattgggaaaaacctaagtcccacatcagatagatgagactattgat 12124760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 3055776 - 3055832
Alignment:
Q  32 attgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||| |||||| |||||  ||||||||||||| ||||||||||||||||    
T  3055776 attgggaaaaacccaagtcccacattggatagataggactcttgatgagagtttata 3055832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 28245983 - 28246042
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||| |||||||  |||| ||||||||||||||||    
T  28245983 tgtattgggaaaaacccaagtcccacatcggatagatgagactcttgatgagagtttata 28246042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 26806503 - 26806560
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| || ||| ||||||||||||| ||||| ||||||||||    
T  26806503 tattgggaaaaacccaagtcccaaatcggatagataggactcttgataagagtttata 26806560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 28497326 - 28497269
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||| ||||||||||    
T  28497326 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttata 28497269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 1923105 - 1923046
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| ||||||||||||||| |||| ||||  ||||||||||    
T  1923105 tgtattgggaaaaacccatgtcccacatcagatagataagactcttgagaagagtttata 1923046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 6218471 - 6218526
Alignment:
Q  88 acctcactagccggttttatgaaattgtattagactcagctacgatttctaagaca 143  Q
    ||||||| ||||||||||||| |||||| |||| |||| | |||||||||||||||    
T  6218471 acctcacaagccggttttatggaattgtgttaggctcaaccacgatttctaagaca 6218526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 8305069 - 8305010
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||| |||  ||||| |||||||| |||| ||||| ||||||||||    
T  8305069 tgtattgggaaaaactcatgtcctacatcggatagataagacttttgataagagtttata 8305010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 17077054 - 17076999
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtt 84  Q
    ||||||||||||||| |||||| |||||| |||||||  |||| ||||||||||||    
T  17077054 tgtattgggaaaaacccaagtcccacatcggatagatgagactcttgatgagagtt 17076999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 17077258 - 17077203
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtt 84  Q
    ||||||||||||||| |||||| |||||| |||||||  |||| ||||||||||||    
T  17077258 tgtattgggaaaaacccaagtcccacatcggatagatgagactcttgatgagagtt 17077203  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 29113439 - 29113498
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||| ||||||||||||||| |||| ||||  ||||||||||    
T  29113439 tgtattgggaaaaacccatgtcccacatcagatagataagactcttgagaagagtttata 29113498  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 33629911 - 33629970
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||| |||||||||||||||| |||||  |||||||  |||| ||||||||||||||||    
T  33629911 tgtatcgggaaaaactcaagtcccacattggatagatgagactcttgatgagagtttata 33629970  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 39110897 - 39110944
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    |||||||||||||||||||||| |||||| |||||||| |||| ||||    
T  39110897 tgtattgggaaaaactcaagtcccacatcggatagataagactcttga 39110944  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 52827346 - 52827287
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||  |||||| ||||||||||||  ||||||||||||| ||||| ||||||||||    
T  52827346 tgtattgttaaaaacccaagtctcacattggatagataggactcttgataagagtttata 52827287  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 53720785 - 53720726
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttat 87  Q
    ||||||||||||||||| ||||| |||||| |||||||| |||| ||||| | |||||||    
T  53720785 atgtattgggaaaaactgaagtcccacatcggatagataagacttttgataaaagtttat 53720726  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 3640197 - 3640255
Alignment:
Q  30 gtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||||| ||| ||| || |||||||| |||| ||||| ||||||||||    
T  3640197 gtattgggaaaaactcatgtcccacgtcggatagataagactcttgataagagtttata 3640255  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 12879564 - 12879514
Alignment:
Q  38 aaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||||||||| |||| |||||| ||||||| ||| ||||||    
T  12879564 aaaaactcaagtctcacatcggataaataggaatattgataagattttata 12879514  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 41743265 - 41743227
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagata 66  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  41743265 atgtattgggaaaaacttaagtctcacatcggatagata 41743227  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 3640446 - 3640503
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagttta 86  Q
    ||||||||||||||||||  || |||||| |||||||| |||| ||||| ||||||||    
T  3640446 tgtattgggaaaaactcatctcccacatcggatagataagactcttgataagagttta 3640503  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 5065845 - 5065890
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattga 76  Q
    |||||| |||||||||||||||||||| |||||||| |||| ||||    
T  5065845 tattggaaaaaactcaagtctcacatcggatagataagactcttga 5065890  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 25753717 - 25753660
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||| | |||| ||||| ||||||||||    
T  25753717 tattgggaaaaacccaagtcccacatcggatagacaagactcttgataagagtttata 25753660  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 43943665 - 43943722
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  43943665 tattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 43943722  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 49380992 - 49380935
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||  ||||||||||||| |||||||| |||| ||||  ||||||||||    
T  49380992 tattgggaaaaatccaagtctcacatcggatagataagactcttgagaagagtttata 49380935  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 3047474 - 3047514
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggact 71  Q
    ||||||||||||||||||||| |||||||||| ||| ||||    
T  3047474 tattgggaaaaactcaagtcttacatcagataaataagact 3047514  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 42845136 - 42845076
Alignment:
Q  28 atgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||| ||||||||||||||  ||||||||||||||| |||| ||||| ||||||||||    
T  42845136 atgtattaggaaaaactcaagtaccacatcagatagataagactcttgataagagtttata 42845076  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 49895145 - 49895179
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagat 65  Q
    |||||||||||||||||||||||||||||||||||    
T  49895145 tattgggaaaaactcaagtctcacatcagatagat 49895179  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 38871267 - 38871210
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| ||||||||||||||| |||| ||||| | ||||||||    
T  38871267 tattgggaaaaacccaagtcccacatcagatagataagactcttgataaaagtttata 38871210  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 45395544 - 45395601
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| || |||||||||||| |||| ||||| ||||||||||    
T  45395544 tattgggaaaaacccaagtcccatatcagatagataagactcttgataagagtttata 45395601  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 52921579 - 52921522
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||| |||||| |||||| ||||||||| ||| ||| ||||||||||||    
T  52921579 tattgggaaaaacccaagtcccacatcggatagatagtactcttggtgagagtttata 52921522  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 36332301 - 36332360
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| |||||| |||||  ||||||||| ||| ||||| ||||||||||    
T  36332301 tgtattgggaaaaacgcaagtcccacattggatagatagaactcttgattagagtttata 36332360  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 49828665 - 49828720
Alignment:
Q  33 ttgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||| |||||| |||||| ||||||||||||| ||||| ||| ||||||    
T  49828665 ttgggaaaaacccaagtcccacatctgatagataggactcttgataagattttata 49828720  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 33771238 - 33771320
Alignment:
Q  223 acctggagaagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccattgattgtcataaagaacttg 305  Q
    ||||| |||||||| ||||| || |||| ||||| |||||| |  ||||| ||||||||||||||||| | || |||||||||    
T  33771238 acctgcagaagatcaccaatatttactataagagatccatgcaccggaggaacatcaatccattgattttgatgaagaacttg 33771320  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 39649197 - 39649139
Alignment:
Q  30 gtattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||||||||||| |||||| |||||| |||||||| |||| ||||  ||||||||||    
T  39649197 gtattgggaaaaacccaagtcccacatcggatagataagactcttgagaagagtttata 39649139  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 1233918 - 1233975
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    |||||| |||||| |||||| |||||| |||||||  |||| ||||||||||||||||    
T  1233918 tattggtaaaaacccaagtcccacatcggatagatgagactcttgatgagagtttata 1233975  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 13959394 - 13959451
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||| ||| ||||||||||||| |||||||| |||| ||||  ||||||||||    
T  13959394 tattgggaataacgcaagtctcacatcggatagataagactcttgagaagagtttata 13959451  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 40315962 - 40315913
Alignment:
Q  39 aaaactcaagtctcacatcagatagataggactattgatgagagtttata 88  Q
    ||||||||||||||| || ||||||| |||||| ||||||| ||||||||    
T  40315962 aaaactcaagtctcatataagatagaaaggactcttgatgaaagtttata 40315913  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 5222686 - 5222742
Alignment:
Q  31 tattgggaaaaactcaagtctcacatcagatagataggactattgatgagagtttat 87  Q
    |||||||||||||  ||||| |||||| |||||||| |||| ||||| |||||||||    
T  5222686 tattgggaaaaacctaagtcccacatctgatagataagactcttgataagagtttat 5222742  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 22892535 - 22892499
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagat 65  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  22892535 tgtattgggaaaaacccaagtcccacatcagatagat 22892499  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 47377825 - 47377873
Alignment:
Q  29 tgtattgggaaaaactcaagtctcacatcagatagataggactattgat 77  Q
    |||||||||||||||||| ||| |||||| |||||||| |||| |||||    
T  47377825 tgtattgggaaaaactcatgtcccacatcggatagataagactcttgat 47377873  T

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Target: scaffold1138 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 1978 - 1926
Alignment:
Q  38 aaaaactcaagtctcacatcagatagataggactattgatgagagtttatacc 90  Q
    |||||| ||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  1978 aaaaacccaagtctcacatcggatagataagactcttgataagagtttatacc 1926  T

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