View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_32 (Length: 354)

Name: NF15523_low_32
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_32
NF15523_low_32
[»] chr4 (45 HSPs)
chr4 (1-194)||(23707850-23708043)
chr4 (1-194)||(23009657-23009833)
chr4 (18-181)||(8119420-8119577)
chr4 (14-181)||(8119524-8119685)
chr4 (79-194)||(41861735-41861849)
chr4 (79-194)||(52680485-52680599)
chr4 (14-181)||(8119740-8119895)
chr4 (104-190)||(23707968-23708054)
chr4 (14-181)||(8119632-8119793)
chr4 (81-194)||(23009970-23010083)
chr4 (55-132)||(23708056-23708133)
chr4 (203-340)||(23707227-23707366)
chr4 (1-84)||(23707846-23707929)
chr4 (79-194)||(41946283-41946397)
chr4 (1-78)||(41861737-41861813)
chr4 (1-78)||(52680521-52680597)
chr4 (81-180)||(26603671-26603770)
chr4 (1-78)||(23009972-23010049)
chr4 (1-78)||(41946285-41946361)
chr4 (1-67)||(8119829-8119895)
chr4 (83-177)||(23009771-23009865)
chr4 (83-171)||(54242942-54243030)
chr4 (90-181)||(8119372-8119469)
chr4 (1-66)||(26603671-26603736)
chr4 (83-171)||(54242787-54242875)
chr4 (83-171)||(11659283-11659371)
chr4 (79-137)||(50234768-50234825)
chr4 (1-49)||(11659291-11659339)
chr4 (83-171)||(22453763-22453850)
chr4 (1-57)||(54242819-54242875)
chr4 (76-171)||(48808346-48808441)
chr4 (83-137)||(54243090-54243144)
chr4 (203-277)||(55466351-55466425)
chr4 (83-171)||(11654419-11654507)
chr4 (1-57)||(11654618-11654674)
chr4 (79-127)||(23009516-23009564)
chr4 (1-49)||(54242974-54243022)
chr4 (90-165)||(8120225-8120300)
chr4 (76-135)||(34336829-34336888)
chr4 (113-171)||(11654618-11654676)
chr4 (81-171)||(39405529-39405619)
chr4 (1-35)||(50234756-50234790)
chr4 (4-48)||(11654428-11654472)
chr4 (5-57)||(22453798-22453850)
chr4 (82-134)||(40910124-40910176)
[»] chr7 (40 HSPs)
chr7 (79-194)||(13604751-13604866)
chr7 (1-78)||(13604753-13604830)
chr7 (203-339)||(23096220-23096354)
chr7 (79-188)||(23096833-23096942)
chr7 (79-194)||(7891508-7891622)
chr7 (79-194)||(22004731-22004845)
chr7 (82-192)||(40239318-40239428)
chr7 (11-78)||(7891553-7891620)
chr7 (11-78)||(22004776-22004843)
chr7 (79-190)||(29953953-29954064)
chr7 (7-81)||(40239357-40239431)
chr7 (1-76)||(29953989-29954064)
chr7 (76-171)||(34406586-34406681)
chr7 (7-68)||(23096839-23096900)
chr7 (87-171)||(2734375-2734459)
chr7 (83-171)||(15236312-15236400)
chr7 (83-172)||(16717855-16717944)
chr7 (1-58)||(16717887-16717944)
chr7 (83-172)||(17692065-17692154)
chr7 (1-58)||(17692097-17692154)
chr7 (83-171)||(2733618-2733706)
chr7 (83-171)||(2734074-2734162)
chr7 (2-55)||(2733775-2733828)
chr7 (1-57)||(2733618-2733674)
chr7 (1-57)||(2734375-2734431)
chr7 (1-57)||(15236493-15236549)
chr7 (83-169)||(2733775-2733861)
chr7 (83-137)||(15236616-15236670)
chr7 (1-47)||(16718072-16718118)
chr7 (1-47)||(17692282-17692328)
chr7 (83-137)||(34406467-34406521)
chr7 (1-46)||(34406756-34406801)
chr7 (1-57)||(2734074-2734130)
chr7 (1-49)||(15236344-15236392)
chr7 (206-277)||(23096503-23096572)
chr7 (83-171)||(34406745-34406833)
chr7 (83-134)||(32200410-32200461)
chr7 (1-49)||(15236648-15236696)
chr7 (83-135)||(32661098-32661150)
chr7 (1-49)||(34406442-34406489)
[»] chr3 (43 HSPs)
chr3 (81-194)||(53522690-53522803)
chr3 (79-192)||(40817377-40817490)
chr3 (203-340)||(40817873-40818013)
chr3 (79-194)||(36093669-36093783)
chr3 (4-94)||(40817416-40817506)
chr3 (79-194)||(18199570-18199684)
chr3 (79-194)||(26949265-26949379)
chr3 (1-78)||(53522692-53522769)
chr3 (11-94)||(26949310-26949393)
chr3 (1-84)||(36093665-36093747)
chr3 (1-78)||(18199606-18199682)
chr3 (76-171)||(40822300-40822395)
chr3 (79-171)||(40822761-40822853)
chr3 (83-171)||(49067926-49068014)
chr3 (83-171)||(53927540-53927628)
chr3 (79-134)||(36006893-36006948)
chr3 (207-273)||(14602365-14602431)
chr3 (83-171)||(40822147-40822235)
chr3 (83-137)||(36946478-36946532)
chr3 (4-57)||(40822800-40822853)
chr3 (1-57)||(40822179-40822235)
chr3 (83-171)||(40822610-40822698)
chr3 (1-57)||(49067926-49067982)
chr3 (83-171)||(53927128-53927216)
chr3 (83-163)||(55369550-55369630)
chr3 (1-49)||(55369582-55369630)
chr3 (83-163)||(55369705-55369785)
chr3 (1-57)||(40822339-40822395)
chr3 (83-171)||(40822455-40822543)
chr3 (1-57)||(40822642-40822698)
chr3 (83-135)||(51654896-51654948)
chr3 (83-171)||(53927424-53927512)
chr3 (1-57)||(53927540-53927596)
chr3 (1-49)||(55369737-55369785)
chr3 (108-171)||(36946756-36946819)
chr3 (83-134)||(40793631-40793682)
chr3 (1-55)||(36946446-36946500)
chr3 (4-57)||(36946599-36946652)
chr3 (1-46)||(53927139-53927184)
chr3 (1-57)||(36946756-36946812)
chr3 (83-135)||(51654833-51654885)
chr3 (83-171)||(53927283-53927371)
chr3 (1-57)||(53927283-53927339)
[»] chr6 (28 HSPs)
chr6 (79-194)||(30142458-30142572)
chr6 (82-193)||(25000208-25000319)
chr6 (79-194)||(440309-440425)
chr6 (79-194)||(30142298-30142413)
chr6 (207-340)||(440862-440997)
chr6 (79-194)||(3589426-3589540)
chr6 (1-78)||(30142494-30142570)
chr6 (3-78)||(30142336-30142411)
chr6 (1-78)||(440345-440423)
chr6 (1-78)||(25000241-25000318)
chr6 (11-78)||(3589471-3589538)
chr6 (1-74)||(6399532-6399604)
chr6 (83-171)||(21855417-21855505)
chr6 (79-185)||(6399535-6399636)
chr6 (83-170)||(26899663-26899750)
chr6 (83-171)||(21854930-21855018)
chr6 (83-171)||(26899808-26899896)
chr6 (79-134)||(4621123-4621178)
chr6 (1-55)||(21855103-21855157)
chr6 (114-171)||(21855539-21855596)
chr6 (1-57)||(21854930-21854986)
chr6 (1-48)||(21855548-21855595)
chr6 (1-56)||(26899663-26899718)
chr6 (83-137)||(21854809-21854863)
chr6 (83-169)||(21855103-21855189)
chr6 (83-163)||(21855270-21855350)
chr6 (1-49)||(21855270-21855318)
chr6 (1-57)||(21855417-21855473)
[»] chr5 (40 HSPs)
chr5 (92-194)||(25756942-25757044)
chr5 (79-194)||(21267045-21267160)
chr5 (79-194)||(32673017-32673131)
chr5 (207-340)||(21267909-21268044)
chr5 (79-178)||(38096512-38096611)
chr5 (92-194)||(25790757-25790859)
chr5 (1-71)||(25790780-25790850)
chr5 (1-78)||(32673053-32673129)
chr5 (1-84)||(25756938-25757021)
chr5 (1-64)||(38096512-38096575)
chr5 (83-171)||(17414346-17414434)
chr5 (1-78)||(21267081-21267158)
chr5 (86-171)||(38096973-38097058)
chr5 (206-277)||(21267655-21267726)
chr5 (83-171)||(17547733-17547821)
chr5 (83-171)||(35393492-35393580)
chr5 (83-171)||(35393647-35393735)
chr5 (83-171)||(38096679-38096767)
chr5 (1-57)||(38096825-38096881)
chr5 (83-171)||(41041789-41041877)
chr5 (90-171)||(38096825-38096906)
chr5 (83-171)||(32719209-32719297)
chr5 (1-57)||(32719241-32719297)
chr5 (1-57)||(38096973-38097029)
chr5 (1-57)||(41041789-41041845)
chr5 (83-163)||(41041968-41042048)
chr5 (83-137)||(17547462-17547516)
chr5 (1-57)||(17414346-17414402)
chr5 (1-49)||(17547592-17547640)
chr5 (1-49)||(17547741-17547789)
chr5 (1-57)||(35393492-35393548)
chr5 (1-49)||(35393655-35393703)
chr5 (83-138)||(38097057-38097112)
chr5 (1-46)||(35394296-35394341)
chr5 (1-49)||(17547436-17547484)
chr5 (83-171)||(35394126-35394213)
chr5 (107-171)||(35394285-35394349)
chr5 (1-57)||(38096679-38096735)
chr5 (1-49)||(41041968-41042016)
chr5 (83-171)||(41042122-41042210)
[»] chr2 (20 HSPs)
chr2 (79-194)||(40603495-40603609)
chr2 (79-190)||(13906031-13906141)
chr2 (79-194)||(26453660-26453774)
chr2 (1-78)||(40603531-40603607)
chr2 (1-76)||(13906067-13906141)
chr2 (11-78)||(26453705-26453772)
chr2 (83-171)||(38328108-38328196)
chr2 (83-171)||(38328970-38329058)
chr2 (83-171)||(39087636-39087724)
chr2 (86-171)||(38328556-38328641)
chr2 (83-171)||(38327916-38328004)
chr2 (83-171)||(38328254-38328342)
chr2 (1-57)||(38328286-38328342)
chr2 (1-57)||(38328585-38328641)
chr2 (1-57)||(39087636-39087692)
chr2 (1-57)||(38328140-38328196)
chr2 (1-57)||(38329002-38329058)
chr2 (1-57)||(38327948-38328004)
chr2 (83-171)||(39087798-39087886)
chr2 (1-49)||(39087806-39087854)
[»] chr1 (10 HSPs)
chr1 (79-194)||(2047110-2047224)
chr1 (79-194)||(36461788-36461902)
chr1 (1-84)||(36461824-36461906)
chr1 (79-193)||(35596817-35596929)
chr1 (1-78)||(2047112-2047188)
chr1 (79-181)||(35597873-35597974)
chr1 (1-78)||(35596818-35596893)
chr1 (79-134)||(21055889-21055944)
chr1 (1-67)||(35597873-35597938)
chr1 (79-119)||(8256237-8256277)
[»] scaffold0121 (2 HSPs)
scaffold0121 (79-194)||(41548-41662)
scaffold0121 (11-84)||(41593-41666)
[»] chr8 (18 HSPs)
chr8 (79-194)||(14996340-14996454)
chr8 (86-183)||(35607023-35607119)
chr8 (81-194)||(23274383-23274496)
chr8 (1-78)||(14996342-14996418)
chr8 (5-78)||(23274421-23274494)
chr8 (1-74)||(35607051-35607124)
chr8 (83-171)||(41843994-41844082)
chr8 (79-171)||(41844193-41844285)
chr8 (83-171)||(16913986-16914073)
chr8 (83-171)||(41843839-41843927)
chr8 (1-57)||(16913986-16914042)
chr8 (79-145)||(35606956-35607019)
chr8 (1-57)||(41844193-41844249)
chr8 (1-49)||(41843847-41843895)
chr8 (1-57)||(41843994-41844050)
chr8 (85-171)||(14994037-14994123)
chr8 (1-38)||(35606989-35607026)
chr8 (7-62)||(23274325-23274378)
[»] scaffold0090 (8 HSPs)
scaffold0090 (83-168)||(13892-13977)
scaffold0090 (83-171)||(13425-13513)
scaffold0090 (1-57)||(13425-13481)
scaffold0090 (83-171)||(13587-13675)
scaffold0090 (83-171)||(13735-13823)
scaffold0090 (1-54)||(13892-13945)
scaffold0090 (5-57)||(13735-13787)
scaffold0090 (1-57)||(14044-14100)
[»] scaffold0246 (4 HSPs)
scaffold0246 (79-171)||(9799-9891)
scaffold0246 (1-57)||(9799-9855)
scaffold0246 (83-171)||(9644-9732)
scaffold0246 (5-57)||(9644-9696)
[»] scaffold0891 (2 HSPs)
scaffold0891 (1-57)||(2077-2134)
scaffold0891 (83-171)||(2077-2166)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23708043 - 23707850
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaac 100  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23708043 ttgccctaattttaacctaaattcagtgcttttttttactgtattacccctgtttaaaatatcaaattgcagaaattttcttttatttattaaagttaac 23707944  T
Q  101 ccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattgcataaatctcc 194  Q
    || |||||||||||||||||||||||||| ||||||| |||| ||  |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  23707943 ccgaatgctaattgttgccctaattttaagctaaattcagtgcttgcttttactgtattacccctatttaaaatatcaaattgcagaaatctcc 23707850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23009833 - 23009657
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaac 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||                 ||||||||||||||||||||    
T  23009833 ttgcccttattttaacctaaattcagtgcttgcttttactgtattagccctgtttaaaatatc-----------------ttttatttattaaagttaac 23009751  T
Q  101 ccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattgcataaatctcc 194  Q
     |  ||||||||  ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  23009750 acggatgctaatgtttgccctaattttaacctaaattcagtgtttacttttactgtattacccctgtttagaatatcaaattgcagtaatctcc 23009657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 8119420 - 8119577
Alignment:
Q  18 taaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaacccaaatgctaattgttg 117  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||            ||||||||||||||||||||||| ||||||||||||||    
T  8119420 taaattcagtgcttgcttttactgtatcacccctgtttaaaatatcaaat------------cttttatttattaaagttaacccgaatgctaattgttg 8119507  T
Q  118 ccctaatttt------aacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    ||||||||||      |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||    
T  8119508 ccctaattttaacctaaacctaaattcagtgcttgcttttactgtattacccctgtttaaaatatcaaat 8119577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 8119524 - 8119685
Alignment:
Q  14 aacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaacccaaatgctaatt 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||||| |||||||||     
T  8119524 aacctaaattcagtgcttgcttttactgtattacccctgtttaaaatatcaaa------------tcttttatttattaaagttaacccgaatgctaatc 8119611  T
Q  114 gttgccctaatttt------aacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    ||||||||||||||      |||||||||| |||| ||  ||||||||||||||||||| ||||||||||||||    
T  8119612 gttgccctaattttatcctaaacctaaattcagtgcttgcttttactgtattacccctgcttaaaatatcaaat 8119685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 41861849 - 41861735
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  41861849 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 41861751  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  41861750 aattgcagaaatctcc 41861735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 52680485 - 52680599
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  52680485 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 52680583  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  52680584 aattgcagaaatctcc 52680599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 8119740 - 8119895
Alignment:
Q  14 aacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaacccaaatgctaatt 113  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||||            ||||||||||||||||||||||  |||| |||||    
T  8119740 aacctaaattcagtgcttgcttttactctattacccctgcttaaaatatcaaat------------cttttatttattaaagttaaccagaatgttaatt 8119827  T
Q  114 gttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    |||||||||| ||||||||||||| | || ||  ||||||||||||||||||||||||||||| ||||    
T  8119828 gttgccctaactttaacctaaattcaatgcttgcttttactgtattacccctgtttaaaatataaaat 8119895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 23708054 - 23707968
Alignment:
Q  104 aatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattgcataaat 190  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23708054 aatgctaattgttgccctaattttaacctaaattcagtgcttttttttactgtattacccctgtttaaaatatcaaattgcagaaat 23707968  T

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Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 8119632 - 8119793
Alignment:
Q  14 aacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaagttaacccaaatgctaatt 113  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||            |||||||||||||||||||| || ||||||||||    
T  8119632 aacctaaattcagtgcttgcttttactgtattacccctgcttaaaatatcaaat------------cttttatttattaaagttaatccgaatgctaatt 8119719  T
Q  114 gttgccctaatttt------aacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    ||||||||||||||      |||||||||| |||| ||  ||||||| ||||||||||| ||||||||||||||    
T  8119720 gttgccctaattttatcctaaacctaaattcagtgcttgcttttactctattacccctgcttaaaatatcaaat 8119793  T

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Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 23010083 - 23009970
Alignment:
Q  81 ttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaa 180  Q
    ||||||||||||||||||||||  ||||||||  |||||||||||||||| |||||| |||||||  ||||||||||||||||||||| ||||||| |||    
T  23010083 ttttatttattaaagttaacccggatgctaatgtttgccctaattttaacttaaattcagtgtttgcttttactgtattacccctgttcaaaatattaaa 23009984  T
Q  181 ttgcataaatctcc 194  Q
    ||||| ||||||||    
T  23009983 ttgcagaaatctcc 23009970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 23708133 - 23708056
Alignment:
Q  55 taaaatatcaaattgcagaaatcttcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacct 132  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23708133 taaaatataaaattgcagaaatcttcttttatttattaaagttaacccgaatgctaattgttgccctaattttaacct 23708056  T

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Target: chr4; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 203 - 340
Target Start/End: Complemental strand, 23707366 - 23707227
Alignment:
Q  203 gtccgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata---nnnnnnnnnngtttctatgctt 299  Q
    ||||||||||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||             ||||||||||||    
T  23707366 gtccgttcttccataccaaatctatcgattgcaggtgcttcaggttaggtttttatgctttgttacttattgatattttttttgttttgtttctatgctt 23707267  T
Q  300 tgttgttgctatttgtgtttcattttaatggcgttcctttg 340  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  23707266 tgttgttgctatttgtgtttca-gttaatggcgttcctttg 23707227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23707929 - 23707846
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttctttt 84  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  23707929 ttgccctaattttaagctaaattcagtgcttgcttttactgtattacccctatttaaaatatcaaattgcagaaatctcctttt 23707846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 41946397 - 41946283
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||| |||||| | || ||  |||||||||||||||| ||||||||||||||    
T  41946397 tcttttatttattaaagttaacccggatgctaattgttgccctaa-tttaacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatca 41946299  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  41946298 aattgcagaaatctcc 41946283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41861813 - 41861737
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41861813 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 41861737  T

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Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52680521 - 52680597
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52680521 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 52680597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 26603770 - 26603671
Alignment:
Q  81 ttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaa 180  Q
    |||||||||| |||||||| |  |||||||| |||||||||||||||| |||||| | |||||||  |||||||||||||||||||||||||||||||||    
T  26603770 ttttatttatcaaagttaagctgaatgctaaatgttgccctaattttagcctaaaatcagtgtttacttttactgtattacccctgtttaaaatatcaaa 26603671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23010049 - 23009972
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  23010049 ttgccctaattttaacttaaattcagtgtttgcttttactgtattacccctgttcaaaatattaaattgcagaaatct 23009972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41946361 - 41946285
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41946361 ttgccctaattt-aacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 41946285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8119829 - 8119895
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaat 67  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  8119829 ttgccctaactttaacctaaattcaatgcttgcttttactgtattacccctgtttaaaatataaaat 8119895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 23009865 - 23009771
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatc 177  Q
    ||||||||||||||||||||  || |||||  ||||||| ||||||||||||||| |||| ||  ||||||||||||| ||||||||||||||||    
T  23009865 ttatttattaaagttaacccggattctaatgtttgcccttattttaacctaaattcagtgcttgcttttactgtattagccctgtttaaaatatc 23009771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 54242942 - 54243030
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||   || ||  ||||||||||||||||| ||||||    
T  54242942 ttatttattaaagttaacccagacgctaactgttgccctaattttaacctaaattctatgcttatttttactgtattacccccgtttaa 54243030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 8119372 - 8119469
Alignment:
Q  90 ttaaagttaacccaaatgctaattgttgccctaattttaacc------taaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    |||||||||| || ||||||||||||||||||||||||||||      |||||| |||| ||  ||||||||||| ||||||||||||||||||||||    
T  8119372 ttaaagttaatccgaatgctaattgttgccctaattttaacctaaacttaaattcagtgcttgcttttactgtatcacccctgtttaaaatatcaaat 8119469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26603736 - 26603671
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaa 66  Q
    |||||||||||||| |||||| |||||| || ||||||||||||||||| ||||||||||||||||    
T  26603736 ttgccctaattttagcctaaaatcagtgtttacttttactgtattacccctgtttaaaatatcaaa 26603671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 54242787 - 54242875
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||| || | ||||| |||||||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  54242787 ttatttattaaagttaactcagacgctaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 54242875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 11659371 - 11659283
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  |||||||||||||||||| |||||    
T  11659371 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattctatgcttacttttactgtattacccctctttaa 11659283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 50234825 - 50234768
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||||||||||||||||||| | || || |||||||||||||||||||||||||||||    
T  50234825 tcttttatttattaaagttaatcgaa-tgataattgttgccctaattttaacctaaatt 50234768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11659339 - 11659291
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  11659339 ttgccctaattttaacctaaattctatgcttacttttactgtattaccc 11659291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 22453763 - 22453850
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||| ||  | ||| ||||| ||||||||||||||||||||  || ||  |||||||||| |||||||||||||    
T  22453763 ttatttattaaagttaaccgaac-gttaactgttgtcctaattttaacctaaattttatgcttacttttactgtactacccctgtttaa 22453850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 54242819 - 54242875
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  54242819 ttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 54242875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 48808346 - 48808441
Alignment:
Q  76 tcttcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| |||||  ||||||||||||| ||||| || ||||||||||| |||||||||| |||| || ||  || |||||||||| |||| |||||    
T  48808346 tcttctcttattccttaaagttaacccgaatgcaaaatgttgccctaaatttaacctaactttaatgattaattatactgtattagccctatttaa 48808441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 54243090 - 54243144
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||||||||||||||||||  | |||||  ||||||||||||||||||||||||    
T  54243090 ttatttattaaagttaacccggacgctaacggttgccctaattttaacctaaatt 54243144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 55466351 - 55466425
Alignment:
Q  203 gtccgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata 277  Q
    |||||||||| ||||| |||||| ||||| |||| ||||| ||||||||||| |||| |||||| | ||||||||    
T  55466351 gtccgttctttcataccgaatctctccatcgcagttgcttcaggttaggtttctatgttttgtttcgtattgata 55466425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 11654507 - 11654419
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  |  |||| |||| ||||||||||||||||||||   || ||  ||||||||||||||| || |||||    
T  11654507 ttatttattaaagttaacccggaccctaactgtttccctaattttaacctaaattatatgcttacttttactgtattacctctatttaa 11654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11654674 - 11654618
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||| ||||| |||||||    
T  11654674 ttgccctaattttaacctaaattttatgcttacttttactgtaatacccttgtttaa 11654618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 23009564 - 23009516
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaatttt 127  Q
    ||||||||||||||||||||||||  ||||||||  |||||||||||||    
T  23009564 tcttttatttattaaagttaacccggatgctaatgtttgccctaatttt 23009516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54242974 - 54243022
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  54242974 ttgccctaattttaacctaaattctatgcttatttttactgtattaccc 54243022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 8120225 - 8120300
Alignment:
Q  90 ttaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccct 165  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||   || || ||  ||||||||||||||||||    
T  8120225 ttaaagttaacccgaacgctaattgttgccctagatttaacctaaccctaatgcttaattttactgtattacccct 8120300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 34336829 - 34336888
Alignment:
Q  76 tcttcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaa 135  Q
    ||||||||||| ||||||||||||| || | ||| ||| | |||||||||||||||||||    
T  34336829 tcttcttttatatattaaagttaacacataagcttattttagccctaattttaacctaaa 34336888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 11654676 - 11654618
Alignment:
Q  113 tgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||||||||  || ||  |||||||||| ||||| |||||||    
T  11654676 tgttgccctaattttaacctaaattttatgcttacttttactgtaatacccttgtttaa 11654618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 39405529 - 39405619
Alignment:
Q  81 ttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||| ||||||||||||| ||||| || | ||||||||  |||||||||||||   || ||  ||||||||||||| |||| |||||    
T  39405529 ttttatttcttaaagttaacccgaatgcaaaatcttgccctagatttaacctaaattctttgcttaattttactgtattaaccctatttaa 39405619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50234790 - 50234756
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgctt 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  50234790 ttgccctaattttaacctaaattcagtacttgctt 50234756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11654472 - 11654428
Alignment:
Q  4 ccctaattttaacctaaattcagtgcttgcttttactgtattacc 48  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||    
T  11654472 ccctaattttaacctaaattatatgcttacttttactgtattacc 11654428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 22453798 - 22453850
Alignment:
Q  5 cctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||   ||||| ||||||||||| ||||| |||||||    
T  22453798 cctaattttaacctaaattttatgcttacttttactgtactacccctgtttaa 22453850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 40910124 - 40910176
Alignment:
Q  82 tttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    ||||| ||| ||||||||||| |||||||||||||| ||||  ||||||||||    
T  40910124 tttatatataaaagttaacccgaatgctaattgttgtcctagatttaacctaa 40910176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 13604866 - 13604751
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||||||||    
T  13604866 tcttttatttattaaagttaacccatatgctaattgttgccctaattttaacctaaattcagtgcttgcttttactgtattacccctgtttaaaatatca 13604767  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  13604766 aattgcagaaatctcc 13604751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13604830 - 13604753
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13604830 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccctgtttaaaatatcaaattgcagaaatct 13604753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 203 - 339
Target Start/End: Complemental strand, 23096354 - 23096220
Alignment:
Q  203 gtccgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgatannnnnnnnnngtttctatgctttgt 302  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||          |||||||||||||||    
T  23096354 gtccgttcttccataccgaatctatccatggcaggtgctttaggtta-gtttctatgctttgttacttattgata-tttttttttgtttctatgctttgt 23096257  T
Q  303 tgttgctatttgtgtttcattttaatggcgttccttt 339  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23096256 tgttcctatttgtgtttcattttaatggcgttccttt 23096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 23096942 - 23096833
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| |||||||  |||||||||||||||||||| ||||||||||    
T  23096942 tcttttatttattaaagttaacccgaatgctaattgttgcgataattttaacttaaattcagtgtttgcttttactgtattacccctgtataaaatatca 23096843  T
Q  179 aattgcataa 188  Q
    |||| |||||    
T  23096842 aattacataa 23096833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 7891508 - 7891622
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  7891508 tcttttatttattaaagttaacccgaatgctaattgttgctctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 7891606  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  7891607 aattgcagaaatctcc 7891622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 22004731 - 22004845
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  22004731 tcttttatttattaaagttaacccgaatgctaattgttgtcctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 22004829  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  22004830 aattgcagaaatctcc 22004845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 40239318 - 40239428
Alignment:
Q  82 tttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    ||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||| |||||||  ||||||| ||||||| ||||||||||||||||||    
T  40239318 tttatttattaaagttaacccgaatgttaattgttgctttaattttaacctaaattcagtgtttgcttttactctattacctctgtttaaaatatcaaat 40239417  T
Q  182 tgcataaatct 192  Q
    |||| ||||||    
T  40239418 tgcagaaatct 40239428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7891553 - 7891620
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7891553 tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 7891620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 22004776 - 22004843
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22004776 tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 22004843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 29953953 - 29954064
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    ||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||| |||| ||||||| ||||    
T  29953953 tcttttatttattaaagttaatcagaaggctaattgttgccctaattttaacctaaattcagtgcttgcttttactgtattatccctatttaaaagatca 29954052  T
Q  179 aattgcataaat 190  Q
    || |||| ||||    
T  29954053 aaatgcagaaat 29954064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 40239357 - 40239431
Alignment:
Q  7 taattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttct 81  Q
    |||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  40239357 taattttaacctaaattcagtgtttgcttttactctattacctctgtttaaaatatcaaattgcagaaatcttct 40239431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29953989 - 29954064
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaat 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||||||    
T  29953989 ttgccctaattttaacctaaattcagtgcttgcttttactgtattatccctatttaaaagatcaaaatgcagaaat 29954064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 34406681 - 34406586
Alignment:
Q  76 tcttcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| ||||||||||||||||||| | | | ||| |||||||||||||||||| |||||||  |||||  ||||| ||||||||||||||||||    
T  34406681 tcttctcttatttattaaagttaacctagacgttaactgttgccctaattttaacataaattttatgtttacttttattgtattacccctgtttaa 34406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 23096900 - 23096839
Alignment:
Q  7 taattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaatt 68  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  23096900 taattttaacttaaattcagtgtttgcttttactgtattacccctgtataaaatatcaaatt 23096839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 2734459 - 2734375
Alignment:
Q  87 ttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||  | | ||| ||||||||||||||||||||||||||  || ||  ||||||||||||||||||||||||    
T  2734459 ttattaaagttaacccggacgttaactgttgccctaattttaacctaaattttatgcttacttttactgtattacccctgtttaa 2734375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 15236312 - 15236400
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||||||||   || ||  |||||||||||||||||| |||||    
T  15236312 ttatttattaaagttaacccggacactaattgttgccctaattttaacctaaattatatgcttacttttactgtattacccctatttaa 15236400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 16717855 - 16717944
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaa 172  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |||||||   || ||  |||||||||||||||| ||||||||    
T  16717855 ttatttattaaagttaacccggacgttaattgttgccctaattttaatctaaattctatgcttacttttactgtattacccgtgtttaaa 16717944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16717887 - 16717944
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaa 58  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  16717887 ttgccctaattttaatctaaattctatgcttacttttactgtattacccgtgtttaaa 16717944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 17692065 - 17692154
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaa 172  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |||||||   || ||  |||||||||||||||| ||||||||    
T  17692065 ttatttattaaagttaacccggacgttaattgttgccctaattttaatctaaattctatgcttacttttactgtattacccgtgtttaaa 17692154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17692097 - 17692154
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaa 58  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  17692097 ttgccctaattttaatctaaattctatgcttacttttactgtattacccgtgtttaaa 17692154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 2733706 - 2733618
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| ||||||| |||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  2733706 ttatttattaaagttaacccggacgttaactgttgccttaattttaacctaaattctatgcttgtttttactgtattacccctgtttaa 2733618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 2734162 - 2734074
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| | ||||||||||||||||||||||||  || ||  ||||||||||||||| ||||||||    
T  2734162 ttatttattaaagttaacccggacgttaactattgccctaattttaacctaaattttatgcttacttttactgtattacctctgtttaa 2734074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 2733828 - 2733775
Alignment:
Q  2 tgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgttt 55  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||| |||||    
T  2733828 tgccctaattttaacctaaattctatgcttacttttactgtattacccatgttt 2733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2733674 - 2733618
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||| ||||||||||||||||||  |||||| |||||||||||||||| |||||||    
T  2733674 ttgccttaattttaacctaaattctatgcttgtttttactgtattacccctgtttaa 2733618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2734431 - 2734375
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  2734431 ttgccctaattttaacctaaattttatgcttacttttactgtattacccctgtttaa 2734375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15236493 - 15236549
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||| ||  ||||| ||||||||||||||||| |||||||    
T  15236493 ttgccctaattttaacctaaaatctatgcttacttttactgtattacccctgtttaa 15236549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 2733861 - 2733775
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgttt 169  Q
    ||||||||||||||| |||   ||| |||||| ||||||||||||||||||||||   || ||  |||||||||||||||| |||||    
T  2733861 ttatttattaaagtttacctggatgttaattgatgccctaattttaacctaaattctatgcttacttttactgtattacccatgttt 2733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 15236616 - 15236670
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||    
T  15236616 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaatt 15236670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16718072 - 16718118
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattac 47  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||    
T  16718072 ttgccctaattttaacctaaattctatgcttacttttactgtattac 16718118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17692282 - 17692328
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattac 47  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||    
T  17692282 ttgccctaattttaacctaaattctatgcttacttttactgtattac 17692328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 34406521 - 34406467
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||| |||||||||||||| || | ||| |||||||||||||||||||||||||    
T  34406521 ttattaattaaagttaacccgaacgttaactgttgccctaattttaacctaaatt 34406467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34406801 - 34406756
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtatta 46  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  34406801 ttgccctaattttaacctaaattctatgcttacttttactgtatta 34406756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2734130 - 2734074
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||  |||||||    
T  2734130 ttgccctaattttaacctaaattttatgcttacttttactgtattacctctgtttaa 2734074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15236344 - 15236392
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  15236344 ttgccctaattttaacctaaattatatgcttacttttactgtattaccc 15236392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 23096572 - 23096503
Alignment:
Q  206 cgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata 277  Q
    ||||||||||||  |||||||||||| |||||||||| ||||| | ||| |||||||||||||  |||||||    
T  23096572 cgttcttccata--gaatctatccatcgcaggtgcttcaggtttgatttctatgctttgttacgaattgata 23096503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 34406833 - 34406745
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||| |  | | ||| |||||||||||||||||||||||||   || ||  ||||||||||||| | ||||||||    
T  34406833 ttatttattaaagttaactcggacgttaactgttgccctaattttaacctaaattctatgcttacttttactgtattaactctgtttaa 34406745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 32200410 - 32200461
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    |||||||||||||||||||| ||||| || ||||||||||  ||||||||||    
T  32200410 ttatttattaaagttaacccgaatgcaaaatgttgccctagatttaacctaa 32200461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15236648 - 15236696
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||| ||||||||    
T  15236648 ttgccctaattttaacctaaattatatgcttacttttactatattaccc 15236696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 32661098 - 32661150
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaa 135  Q
    |||| ||| ||||||||||| || ||| ||| |||||||||||||||||||||    
T  32661098 ttatctataaaagttaacccgaaagcttatttttgccctaattttaacctaaa 32661150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34406489 - 34406442
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||||||| |  |||| |||||||||||||||||    
T  34406489 ttgccctaattttaacctaaatt-atagcttacttttactgtattaccc 34406442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 53522803 - 53522690
Alignment:
Q  81 ttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaa 180  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  53522803 ttttatttattaaagttaactcgaatgctaattgttgccctaattttaacctaaatttagtgtttgcttttactttattacccctgtttaaaatatcaaa 53522704  T
Q  181 ttgcataaatctcc 194  Q
    ||||| ||||||||    
T  53522703 ttgcagaaatctcc 53522690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 40817377 - 40817490
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  40817377 tcttttatttattaaagttaactcgaatgctaattgttaccctaattttaacctaaatttagtgcttgcttttactgtattacccctgtttaaaatatca 40817476  T
Q  179 aattgcataaatct 192  Q
    ||||||| ||||||    
T  40817477 aattgcagaaatct 40817490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 203 - 340
Target Start/End: Original strand, 40817873 - 40818013
Alignment:
Q  203 gtccgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata---nnnnnnnnnngtttctatgctt 299  Q
    |||||||||||||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||             ||||||||||||    
T  40817873 gtccgttcttccataccgaatctatccatggcaggtgctccaggttaggtttttatgctttgttacttattgatatttttttagttttgtttctatgctt 40817972  T
Q  300 tgttgttgctatttgtgtttcattttaatggcgttcctttg 340  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40817973 tgttgttgctatttgtgtttcattttaatggcgttcctttg 40818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 36093783 - 36093669
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||  ||||||||||||||    
T  36093783 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacctatgtttaaaatatca 36093685  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  36093684 aattgcagaaatctcc 36093669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 40817416 - 40817506
Alignment:
Q  4 ccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaa 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||    
T  40817416 ccctaattttaacctaaatttagtgcttgcttttactgtattacccctgtttaaaatatcaaattgcagaaatcttttttttttttttaaa 40817506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 18199570 - 18199684
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||| |||||| | || ||  |||||||||||||||| ||||||||||||||    
T  18199570 tcttttatttattaaagttaacccggatgctaattgttgccctaa-tttaacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatca 18199668  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  18199669 aattgcaaaaatctcc 18199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 26949265 - 26949379
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||| | || ||  |||||||||||||||| ||||||||||||||    
T  26949265 tcttttatttattaaagttaacccgaatgctaattgttgtcctaa-tttaacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatca 26949363  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  26949364 aattgcagaaatctcc 26949379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 53522769 - 53522692
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  53522769 ttgccctaattttaacctaaatttagtgtttgcttttactttattacccctgtttaaaatatcaaattgcagaaatct 53522692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 26949310 - 26949393
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttcttttatttattaaa 94  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||    
T  26949310 tttaacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatctcctttttttttttaaa 26949393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36093747 - 36093665
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttctttt 84  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  36093747 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacctatgtttaaaatatcaaattgcagaaatctcctttt 36093665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18199606 - 18199682
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18199606 ttgccctaattt-aacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatcaaattgcaaaaatct 18199682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 40822300 - 40822395
Alignment:
Q  76 tcttcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   |||||  |||||||||||||| |||||||||    
T  40822300 tcttctcttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattctatgtttacttttactgtattactcctgtttaa 40822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 40822761 - 40822853
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  40822761 tcttttatttattaaagttaacccagacgttaactgtttccctaattttaacctaaattctatgcttacttttactgtattacccttgtttaa 40822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 49068014 - 49067926
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  49068014 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 49067926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 53927628 - 53927540
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||| |||||||||  | ||||| ||||||||||||||||||||||||||  || ||  ||||| ||||||||||||||||||    
T  53927628 ttatttattacagttaacccggacgctaactgttgccctaattttaacctaaattttatgcttacttttattgtattacccctgtttaa 53927540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 36006948 - 36006893
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  36006948 tcttttatttattaaagttaatccaaatgctaattgttgccctagatttaacctaa 36006893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 14602365 - 14602431
Alignment:
Q  207 gttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttatt 273  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||| ||||||||||||| ||||    
T  14602365 gttcttccataccgaatctatccatcgcaggtgtttcaggttaggtttctatgctttgttacgtatt 14602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 40822147 - 40822235
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||||||||||||   || ||  |||||||||||||| | |||||||    
T  40822147 ttatttattaaagttaacccggacgctaactgttgccctaattttaacctaaattctatgcttacttttactgtattactcttgtttaa 40822235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 36946532 - 36946478
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||||||||||||    
T  36946532 ttatttattaaagttaacccggacgctaactgttgccctaattttaacctaaatt 36946478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 40822800 - 40822853
Alignment:
Q  4 ccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  40822800 ccctaattttaacctaaattctatgcttacttttactgtattacccttgtttaa 40822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40822179 - 40822235
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| | |||||||    
T  40822179 ttgccctaattttaacctaaattctatgcttacttttactgtattactcttgtttaa 40822235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 40822610 - 40822698
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||| || | | ||| |||||||||||||||||| ||||||   || ||  ||||| ||||||||||||||||||    
T  40822610 ttatttattaaagttaactcagacgttaactgttgccctaattttaacataaattctatgcttacttttattgtattacccctgtttaa 40822698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 49067982 - 49067926
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  49067982 ttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 49067926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 53927216 - 53927128
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| |||||||||||||  ||| ||| ||||||||||||||||||||||||| | || ||  ||||| ||||||| ||||| ||||    
T  53927216 ttattttttaaagttaaccccgatgttaactgttgccctaattttaacctaaattaaatgcttacttttattgtattatccctggttaa 53927128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 55369550 - 55369630
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattaccc 163  Q
    |||||||||||||||||||   | ||||| |||||||||||||||||||||||||   || ||  ||||||||||||||||    
T  55369550 ttatttattaaagttaacctggacgctaactgttgccctaattttaacctaaattctatgcttacttttactgtattaccc 55369630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55369582 - 55369630
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  55369582 ttgccctaattttaacctaaattctatgcttacttttactgtattaccc 55369630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 55369705 - 55369785
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattaccc 163  Q
    ||||||||||||||||| ||  | ||||| |||||||||||||||||||||||||   || ||  ||||||||||||||||    
T  55369705 ttatttattaaagttaatccggacgctaactgttgccctaattttaacctaaattatatgcttacttttactgtattaccc 55369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40822339 - 40822395
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  || || ||||||||||||||| | |||||||    
T  40822339 ttgccctaattttaacctaaattctatgtttacttttactgtattactcctgtttaa 40822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 40822455 - 40822543
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| |||||||||||||| | | ||| |||||||||||||| |||||||||||  ||  |  ||||| |||||||| |||||||||    
T  40822455 ttatttcttaaagttaacccagacgttaactgttgccctaatttaaacctaaattttatgaatacttttattgtattacacctgtttaa 40822543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40822642 - 40822698
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||| |||||||  ||||| |||||| |||||||||| |||||||    
T  40822642 ttgccctaattttaacataaattctatgcttacttttattgtattacccctgtttaa 40822698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 51654896 - 51654948
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaa 135  Q
    |||| ||||||||||||||| || ||| ||| |||||||||||||||||||||    
T  51654896 ttatatattaaagttaacccgaaagcttatttttgccctaattttaacctaaa 51654948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 53927512 - 53927424
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||  || ||  ||||  |||||||||| |||||||    
T  53927512 ttatttattaaagttatcccggacgctaactgttgccttaattttaacctaaattttatgcttacttttgttgtattacccatgtttaa 53927424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53927596 - 53927540
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| |||||| |||||||||| |||||||    
T  53927596 ttgccctaattttaacctaaattttatgcttacttttattgtattacccctgtttaa 53927540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55369737 - 55369785
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  55369737 ttgccctaattttaacctaaattatatgcttacttttactgtattaccc 55369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 36946819 - 36946756
Alignment:
Q  108 ctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||| |||||||||||||||||||||||||   || ||  ||||||| ||||||||||||||||    
T  36946819 ctaactgttgccctaattttaacctaaattatatgcttatttttactatattacccctgtttaa 36946756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 40793682 - 40793631
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    ||||| |||||||||||||| || ||||||||||||||||  ||||||||||    
T  40793682 ttattcattaaagttaacccgaacgctaattgttgccctagatttaacctaa 40793631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36946500 - 36946446
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgttt 55  Q
    ||||||||||||||||||||||||  | ||| |||||||| |||||||| |||||    
T  36946500 ttgccctaattttaacctaaattctatacttacttttactctattacccctgttt 36946446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 36946652 - 36946599
Alignment:
Q  4 ccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||| ||||||||||||||||  ||||| |||||||| |||||||| |||||||    
T  36946652 ccctcattttaacctaaattctatgcttacttttactctattacccctgtttaa 36946599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 53927184 - 53927139
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtatta 46  Q
    ||||||||||||||||||||||| | ||||| |||||| |||||||    
T  53927184 ttgccctaattttaacctaaattaaatgcttacttttattgtatta 53927139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36946812 - 36946756
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   |||||  ||||||| |||||||| |||||||    
T  36946812 ttgccctaattttaacctaaattatatgcttatttttactatattacccctgtttaa 36946756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 51654833 - 51654885
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaa 135  Q
    |||| ||||||||||||||| ||  || ||| |||||||||||||||||||||    
T  51654833 ttatatattaaagttaacccgaaaacttatttttgccctaattttaacctaaa 51654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 53927371 - 53927283
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| | |||||||||||||||| ||||||   || ||  ||||||||||||| || |||||||    
T  53927371 ttatttattaaagttaacccggacgttaactattgccctaattttaacataaattatatgcttacttttactgtattaaccatgtttaa 53927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53927339 - 53927283
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||| ||||||   ||||| |||||||||||||| || |||||||    
T  53927339 ttgccctaattttaacataaattatatgcttacttttactgtattaaccatgtttaa 53927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 30142458 - 30142572
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||  ||||||||||||| |||||||||||||||||    
T  30142458 tcttttatttattaaagttaacccgaatgctacttgttgccctaattttaacctaactttagtgcttgcttttactgtatta-ccctgtttaaaatatca 30142556  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  30142557 aattgcagaaatctcc 30142572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 25000208 - 25000319
Alignment:
Q  82 tttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaat 181  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||  | ||  ||||||||||||||||||||||||||||||||||    
T  25000208 tttatttattaaagttaacccgaaggttaattgttgccctaattttaacctaaatttacagcttgtttttactgtattacccctgtttaaaatatcaaat 25000307  T
Q  182 tgcataaatctc 193  Q
    |||| |||||||    
T  25000308 tgcagaaatctc 25000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 440309 - 440425
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctg-tttaaaatatc 177  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||| ||  |||||||||||||||| || |||||||||||    
T  440309 tcttttatttattaaagttaactcgaatgctaattgttgccctaatcttaacctaaattcagtgcttgattttactgtattacccttgttttaaaatatc 440408  T
Q  178 aaattgcataaatctcc 194  Q
    |||||||| ||||||||    
T  440409 aaattgcagaaatctcc 440425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 30142298 - 30142413
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| | || ||  ||||||||||||||| ||||||||||||||     
T  30142298 tcttttatttgttaaaattaacccaaatgctaattgtcgccctaattttaacctaaattcaatgcttgcttttactgtattaccactgtttaaaatatct 30142397  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  30142398 aattgcagaaatctcc 30142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 440862 - 440997
Alignment:
Q  207 gttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata--nnnnnnnnnngtttctatgctttgttg 304  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||            |||||||||||||||||    
T  440862 gttcttccataccgaatctattcatcgcaggtgcttcaggttaggtttctatgctttgttacttattgatatttttttgttttgtttctatgctttgttg 440961  T
Q  305 ttgctatttgtgtttcattttaatggcgttcctttg 340  Q
    ||||||||||||||||| |||||||| |||||||||    
T  440962 ttgctatttgtgtttcactttaatggtgttcctttg 440997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 3589426 - 3589540
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||| | || ||  |||||||||||||||| ||||||||||||||    
T  3589426 tcttttatttattaaagttaacccggatgctaattgttgccttaattt-aacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatca 3589524  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  3589525 aattgcagaaatctcc 3589540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30142494 - 30142570
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30142494 ttgccctaattttaacctaactttagtgcttgcttttactgtattaccc-tgtttaaaatatcaaattgcagaaatct 30142570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 30142336 - 30142411
Alignment:
Q  3 gccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  30142336 gccctaattttaacctaaattcaatgcttgcttttactgtattaccactgtttaaaatatctaattgcagaaatct 30142411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 440345 - 440423
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtg-tttaaaatatcaaattgcagaaatct 78  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  440345 ttgccctaatcttaacctaaattcagtgcttgattttactgtattacccttgttttaaaatatcaaattgcagaaatct 440423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25000241 - 25000318
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    ||||||||||||||||||||||| |  ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  25000241 ttgccctaattttaacctaaatttacagcttgtttttactgtattacccctgtttaaaatatcaaattgcagaaatct 25000318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 3589471 - 3589538
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3589471 tttaacttaaattcaatgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 3589538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6399604 - 6399532
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaa 74  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  6399604 ttgccctaattttaacctaa-tccagtgcttgcttttactgtattgcctctgtttaaaatatcaaattgcagaa 6399532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 21855505 - 21855417
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| || | ||||||||||| ||||||||||||||||||  || ||  ||||| ||||||||||||||||||    
T  21855505 ttatttattaaagttaacccgaacgttaattgttgccataattttaacctaaattttatgcttacttttattgtattacccctgtttaa 21855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 6399636 - 6399535
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||    |||||| | |||||||||||||||||||| |  |||| ||  |||||||||||| || |||||||||||||||    
T  6399636 tcttttatttattaaagttaacc----tgctaacttttgccctaattttaacctaa-tccagtgcttgcttttactgtattgcctctgtttaaaatatca 6399542  T
Q  179 aattgca 185  Q
    |||||||    
T  6399541 aattgca 6399535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 26899750 - 26899663
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgttta 170  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||   || ||  |||||||||||||| ||||||||    
T  26899750 ttatttattaaagttaacccggatgctaactgttgccctaattttagcctaaattctatgcttacttttactgtattacacctgttta 26899663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 21855018 - 21854930
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||||||||   || ||  ||||||| ||||||| ||||||||    
T  21855018 ttatttattaaagttaacccggatgttatttgttgccctaattttaacctaaattctatgcttacttttactctattaccgctgtttaa 21854930  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 26899896 - 26899808
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| || | ||| |||||||||||||||| |||||||||  || ||  ||||| |||| |||| ||||||||    
T  26899896 ttatttattaaagttaacccgaacgttaagtgttgccctaattttatcctaaattttatgcttacttttattgtactacctctgtttaa 26899808  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 4621123 - 4621178
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||  ||||||||||    
T  4621123 tcttttatttattaaagttaacccgaatactaattgttaccctagatttaacctaa 4621178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21855157 - 21855103
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgttt 55  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||||||| |||||    
T  21855157 ttgccttaattttaacctaaattctatgcttacttttactgtattacccttgttt 21855103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 21855596 - 21855539
Alignment:
Q  114 gttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||||||||  || ||  ||||||||||||||| ||||||||    
T  21855596 gttgccctaattttaacctaaattttatgcttacttttactgtattacctctgtttaa 21855539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21854986 - 21854930
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| |||||||| |||||||  |||||||    
T  21854986 ttgccctaattttaacctaaattctatgcttacttttactctattaccgctgtttaa 21854930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21855595 - 21855548
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacc 48  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||    
T  21855595 ttgccctaattttaacctaaattttatgcttacttttactgtattacc 21855548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26899718 - 26899663
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgttta 56  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||| | ||||||    
T  26899718 ttgccctaattttagcctaaattctatgcttacttttactgtattacacctgttta 26899663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 21854863 - 21854809
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    |||||||||||||||||||   ||||||| |||||||||||||| |||| |||||    
T  21854863 ttatttattaaagttaaccaggatgctaactgttgccctaatttaaacccaaatt 21854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 21855189 - 21855103
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgttt 169  Q
    ||||||||||||||||||||  | | ||| | ||||| |||||||||||||||||   || ||  |||||||||||||||| |||||    
T  21855189 ttatttattaaagttaacccggacgttaactattgccttaattttaacctaaattctatgcttacttttactgtattacccttgttt 21855103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 21855350 - 21855270
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattaccc 163  Q
    ||||||||||||||||||||    ||||| | ||||||||||||||||||| |||   || ||  ||||||||||||||||    
T  21855350 ttatttattaaagttaacccggtcgctaactattgccctaattttaacctacattatatgcttacttttactgtattaccc 21855270  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21855318 - 21855270
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||| |||   ||||| |||||||||||||||||    
T  21855318 ttgccctaattttaacctacattatatgcttacttttactgtattaccc 21855270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21855473 - 21855417
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||| |||||||||||||||||   ||||| |||||| |||||||||| |||||||    
T  21855473 ttgccataattttaacctaaattttatgcttacttttattgtattacccctgtttaa 21855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 25757044 - 25756942
Alignment:
Q  92 aaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattgcataaatc 191  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  25757044 aaagttaacccaaatgctaattattgccttaattttaacctaaattcagtgttggcttttactgtattacccctgtttaaaatatcaaattgcataaatc 25756945  T
Q  192 tcc 194  Q
    |||    
T  25756944 tcc 25756942  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 21267045 - 21267160
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||| |    
T  21267045 tcttttatttattaaagttaacccgaaggctaattgttgccataattttaacctaaattcagtatttacttttactgtattacccctgtttaaaatatta 21267144  T
Q  179 aattgcataaatctcc 194  Q
    |||| || ||||||||    
T  21267145 aattacagaaatctcc 21267160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 32673017 - 32673131
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  32673017 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 32673115  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  32673116 aattgcagaaatctcc 32673131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 21267909 - 21268044
Alignment:
Q  207 gttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata--nnnnnnnnnngtttctatgctttgttg 304  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||            |||||||||||||||||    
T  21267909 gttcttccataccgaatctatccattgcaggtgcttcaggttaggtttctatgctttgttacttattgatatttttttgttttgtttctatgctttgttg 21268008  T
Q  305 ttgctatttgtgtttcattttaatggcgttcctttg 340  Q
    ||||||| |||||||||||||||||| |||||||||    
T  21268009 ttgctatctgtgtttcattttaatggtgttcctttg 21268044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 38096611 - 38096512
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||  |||||||||||||||||||||||||||||||    
T  38096611 tcttttatttatcaaagttaacccgaatgctaattgttgccctaattttaacataaattcagtgcttgcttttactgtattacccctgtttaaaatatca 38096512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 25790757 - 25790859
Alignment:
Q  92 aaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattgcataaatc 191  Q
    |||||||| || ||| |||||||||||||||||||||||||||||| |||| ||  |||||| ||||||||||||||||||||||||||||||||||| |    
T  25790757 aaagttaatccgaatactaattgttgccctaattttaacctaaattcagtgcttgcttttaccgtattacccctgtttaaaatatcaaattgcataaagc 25790856  T
Q  192 tcc 194  Q
    |||    
T  25790857 tcc 25790859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25790780 - 25790850
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgca 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  25790780 ttgccctaattttaacctaaattcagtgcttgcttttaccgtattacccctgtttaaaatatcaaattgca 25790850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32673053 - 32673129
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32673053 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 32673129  T

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Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25757021 - 25756938
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttctttt 84  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  25757021 ttgccttaattttaacctaaattcagtgttggcttttactgtattacccctgtttaaaatatcaaattgcataaatctcctttt 25756938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38096575 - 38096512
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatca 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38096575 ttgccctaattttaacataaattcagtgcttgcttttactgtattacccctgtttaaaatatca 38096512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 17414434 - 17414346
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||   |||||  ||||||||||||||||||||||||    
T  17414434 ttatttattaaagttgacccagacgctaactgttgccctaattttaacctaaattatatgtttacttttactgtattacccctgtttaa 17414346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 21267081 - 21267158
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    ||||| |||||||||||||||||||||  || ||||||||||||||||| |||||||||||| ||||| |||||||||    
T  21267081 ttgccataattttaacctaaattcagtatttacttttactgtattacccctgtttaaaatattaaattacagaaatct 21267158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 38097058 - 38096973
Alignment:
Q  86 tttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||  | ||||| ||||||||||||||||||||||||||  || ||  ||||||||||||||||||||||||    
T  38097058 tttattaaagttaacccggacgctaactgttgccctaattttaacctaaattttatgcttacttttactgtattacccctgtttaa 38096973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 21267655 - 21267726
Alignment:
Q  206 cgttcttccatactgaatctatccattgcaggtgcttgaggttaggtttttatgctttgttacttattgata 277  Q
    ||||||||||||| |||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  21267655 cgttcttccataccgaatctatccatcgcaggtgcttcaggtttggtttctatgctttgttacgtattgata 21267726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 17547821 - 17547733
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||||||||   || ||  |||||||||||||||||| |||||    
T  17547821 ttatttattaaagttaacccggacactaattgttgccctaattttaacctaaattatatgcttacttttactgtattacccctatttaa 17547733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 35393580 - 35393492
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||||||||||||   || ||  ||||| |||||||||| |||||||    
T  35393580 ttatttattaaagttaacccggacgctaactgttgccctaattttaacctaaattatatgcttacttttattgtattacccttgtttaa 35393492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 35393735 - 35393647
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||| |||||||  | ||||| |||||||||||||||||||||||||   || ||  |||||||||||||||||| |||||    
T  35393735 ttatttattaaatttaacccggacgctaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccctatttaa 35393647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 38096767 - 38096679
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| ||||||| ||||||||||||||||||  || ||  ||||| ||||||||||||||||||    
T  38096767 ttatttattaaagttaacccggacgttaactgttgccataattttaacctaaattttatgcttacttttaatgtattacccctgtttaa 38096679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38096881 - 38096825
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  38096881 ttgccctaattttaacctaaattctatgcttacttttactgtattacccatgtttaa 38096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 41041877 - 41041789
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  41041877 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 41041789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 38096906 - 38096825
Alignment:
Q  90 ttaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||  | ||||| |||||||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  38096906 ttaaagttaacccggacgctaactgttgccctaattttaacctaaattctatgcttacttttactgtattacccatgtttaa 38096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 32719209 - 32719297
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||| ||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  32719209 ttattaattaaagttaacccggacgttaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 32719297  T

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Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32719241 - 32719297
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  32719241 ttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 32719297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38097029 - 38096973
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  38097029 ttgccctaattttaacctaaattttatgcttacttttactgtattacccctgtttaa 38096973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41041845 - 41041789
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  41041845 ttgccctaattttaacctaaattatatgcttacttttactgtattacccatgtttaa 41041789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 41042048 - 41041968
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattaccc 163  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  ||||||||||||||||    
T  41042048 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattatatgcttatttttactgtattaccc 41041968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 17547516 - 17547462
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatt 137  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||    
T  17547516 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaatt 17547462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17414402 - 17414346
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   || || ||||||||||||||||| |||||||    
T  17414402 ttgccctaattttaacctaaattatatgtttacttttactgtattacccctgtttaa 17414346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17547640 - 17547592
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||||||||||||||||||| ||  ||||| |||||||||||||||||    
T  17547640 ttgccctaattttaacctaaaatctatgcttacttttactgtattaccc 17547592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17547789 - 17547741
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  17547789 ttgccctaattttaacctaaattatatgcttacttttactgtattaccc 17547741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35393548 - 35393492
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| |||||| |||||||||| |||||||    
T  35393548 ttgccctaattttaacctaaattatatgcttacttttattgtattacccttgtttaa 35393492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35393703 - 35393655
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  35393703 ttgccctaattttaacctaaattatatgcttacttttactgtattaccc 35393655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 38097112 - 38097057
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaattt 138  Q
    |||||||||||||||||  |  | ||||| ||||||||||||||||||||||||||    
T  38097112 ttatttattaaagttaaatcggacgctaactgttgccctaattttaacctaaattt 38097057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35394341 - 35394296
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtatta 46  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||    
T  35394341 ttgccctaattttaacctaaattatatgcttacttttactgtatta 35394296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17547484 - 17547436
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||| ||||||||    
T  17547484 ttgccctaattttaacctaaattatatgcttacttttactatattaccc 17547436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 35394213 - 35394126
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| || ||||| || || || ||||||||| ||||||   || ||  |||||||||||||||||| |||||    
T  35394213 ttatttattaaagttaacccgaacgctaactggtg-ccgaattttaacataaattctatgcttacttttactgtattacccctatttaa 35394126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 35394349 - 35394285
Alignment:
Q  107 gctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||| |||||||||||||||||||||||||   || ||  |||||||||||||  |||||||||    
T  35394349 gctaactgttgccctaattttaacctaaattatatgcttacttttactgtattattcctgtttaa 35394285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38096735 - 38096679
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||| |||||||||||||||||   ||||| |||||| |||||||||| |||||||    
T  38096735 ttgccataattttaacctaaattttatgcttacttttaatgtattacccctgtttaa 38096679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41042016 - 41041968
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   |||||  ||||||||||||||||    
T  41042016 ttgccctaattttaacctaaattatatgcttatttttactgtattaccc 41041968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 41042210 - 41042122
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||| | | ||| ||| | ||||| ||||||||||||||||||  || ||  ||||||| ||||| || |||||||    
T  41042210 ttatttattaaagttaatctagatgttaactattgccttaattttaacctaaattttatgcttacttttactatattatccatgtttaa 41042122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 40603495 - 40603609
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  40603495 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 40603593  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  40603594 aattgcagaaatctcc 40603609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 13906031 - 13906141
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  13906031 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 13906129  T
Q  179 aattgcataaat 190  Q
    ||||||| ||||    
T  13906130 aattgcagaaat 13906141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 26453660 - 26453774
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  26453660 tcttttatttattaaagttaacccgaatgctaattgttgccttaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 26453758  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  26453759 aattgcagaaatctcc 26453774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40603531 - 40603607
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40603531 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 40603607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13906067 - 13906141
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaat 76  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13906067 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaat 13906141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 26453705 - 26453772
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26453705 tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 26453772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 38328108 - 38328196
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||||||||||||   || ||  ||| ||||||||||||||||||||    
T  38328108 ttatttattaaagttaacccggacgctaactgttgccctaattttaacctaaattctatgcttactttcactgtattacccctgtttaa 38328196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 38328970 - 38329058
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  38328970 ttatttattaaagttaacccggacgttaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 38329058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 39087724 - 39087636
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| || | ||| |||||||||||||||||||||||||   || ||  |||||||||||||||| |||||||    
T  39087724 ttatttattaaagttaacccgaacgttaactgttgccctaattttaacctaaattctatgcttacttttactgtattacccatgtttaa 39087636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 38328556 - 38328641
Alignment:
Q  86 tttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||  | | ||| |||||||||||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  38328556 tttattaaagttaacccggacgttaactgttgccctaattttaacctaaattctatgcttacttttactgtattacccctgtttaa 38328641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 38327916 - 38328004
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | |||||||||||||||||||||||||||||   || ||  |||||| ||||||||| |||||||    
T  38327916 ttatttattaaagttaacccggacgttaattgttgccctaattttaacctaaattatatgcttacttttacagtattacccttgtttaa 38328004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 38328254 - 38328342
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||| |||||||||||||  | | ||| |||||||||||||||||||||||||  ||| ||  |||||||||||||||| |||||||    
T  38328254 ttatttgttaaagttaacccggacgttaactgttgccctaattttaacctaaattatgtgcttacttttactgtattacccatgtttaa 38328342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38328286 - 38328342
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  38328286 ttgccctaattttaacctaaattatgtgcttacttttactgtattacccatgtttaa 38328342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38328585 - 38328641
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  38328585 ttgccctaattttaacctaaattctatgcttacttttactgtattacccctgtttaa 38328641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39087692 - 39087636
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  39087692 ttgccctaattttaacctaaattctatgcttacttttactgtattacccatgtttaa 39087636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38328140 - 38328196
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| |||| |||||||||||| |||||||    
T  38328140 ttgccctaattttaacctaaattctatgcttactttcactgtattacccctgtttaa 38328196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38329002 - 38329058
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  38329002 ttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 38329058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38327948 - 38328004
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||| ||||||||| |||||||    
T  38327948 ttgccctaattttaacctaaattatatgcttacttttacagtattacccttgtttaa 38328004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 39087886 - 39087798
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  |   ||| ||||||| |||||||||| ||||||   || ||  |||||||||||||||||| |||||    
T  39087886 ttatttattaaagttaacccggacattaactgttgccttaattttaacataaattctatgcttacttttactgtattacccctatttaa 39087798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39087854 - 39087806
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    ||||| |||||||||| |||||||  ||||| |||||||||||||||||    
T  39087854 ttgccttaattttaacataaattctatgcttacttttactgtattaccc 39087806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 2047224 - 2047110
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  2047224 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 2047126  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  2047125 aattgcagaaatctcc 2047110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 36461788 - 36461902
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||| ||  ||||||||||||| |||||||||||||||||    
T  36461788 tcttttatttattaaagttaaccctaatgttaattgttgctctaattttaacctaaattcagtgcttgcttttactgtatta-ccctgtttaaaatatca 36461886  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  36461887 aattgcaaaaatctcc 36461902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36461824 - 36461906
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttctttt 84  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  36461824 ttgctctaattttaacctaaattcagtgcttgcttttactgtattaccc-tgtttaaaatatcaaattgcaaaaatctcctttt 36461906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 35596929 - 35596817
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  || || |||||||||| ||||||||||||||    
T  35596929 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgcttgcttcta-tgtattacccatgtttaaaatatca 35596832  T
Q  179 aattgcataaatctc 193  Q
    ||||||| |||||||    
T  35596831 aattgcagaaatctc 35596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2047188 - 2047112
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2047188 ttgccctaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatct 2047112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 35597974 - 35597873
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||  || | ||||||||||| ||||||||||||||    
T  35597974 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttaacttaaattcagtgattgcttctcctgtattacccatgtttaaaatatca 35597876  T
Q  179 aat 181  Q
    |||    
T  35597875 aat 35597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35596893 - 35596818
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| ||| |||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  35596893 ttgccctaattt-aacttaaattcagtgcttgcttcta-tgtattacccatgtttaaaatatcaaattgcagaaatct 35596818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 21055889 - 21055944
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaa 134  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  21055889 tcttttatttattaaagttaacccgaatgctaattgttgccctagatttaacctaa 21055944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35597938 - 35597873
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaat 67  Q
    |||||||||||| ||| ||||||||||| |||||| | ||||||||||| |||||||||||||||||    
T  35597938 ttgccctaattt-aacttaaattcagtgattgcttctcctgtattacccatgtttaaaatatcaaat 35597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 8256237 - 8256277
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgcc 119  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8256237 tcttttatttattaaagttaacccgaatgctaattgttgcc 8256277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 41548 - 41662
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  41548 tcttttatttattaaagttaacccgaatgctaattgttgcactaattt-aacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatca 41646  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  41647 aattgcagaaatctcc 41662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 41593 - 41666
Alignment:
Q  11 tttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatcttctttt 84  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  41593 tttaacttaaattcagtgcttgcttttactgtattacccatgtttaaaatatcaaattgcagaaatctcctttt 41666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 14996454 - 14996340
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatca 178  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  14996454 tcttttatttattaaagttaacccgaatgctaattgttgccctaa-tttgacttaaattcagtgcttacttttactgtattacccatgtttaaaatatca 14996356  T
Q  179 aattgcataaatctcc 194  Q
    ||||||| ||||||||    
T  14996355 aattgcagaaatctcc 14996340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 35607023 - 35607119
Alignment:
Q  86 tttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaattg 183  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||||||||    
T  35607023 tttattaaagttaacccga-tgctaacttttgccctaattttaacctaaattcagtgtttgtttttactgtattgcccctgtttaaaatatcaaattg 35607119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 23274383 - 23274496
Alignment:
Q  81 ttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaaaatatcaaa 180  Q
    |||||||||||||| ||||||   ||  ||||||||| ||||||||||||||||||| ||| |||  |||||| ||||||||||| ||||||||||||||    
T  23274383 ttttatttattaaaattaacctgtattataattgttgtcctaattttaacctaaattcagtatttgcttttaccgtattacccctatttaaaatatcaaa 23274482  T
Q  181 ttgcataaatctcc 194  Q
    ||||| ||||||||    
T  23274483 ttgcagaaatctcc 23274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 14996418 - 14996342
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||| | | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14996418 ttgccctaatttga-cttaaattcagtgcttacttttactgtattacccatgtttaaaatatcaaattgcagaaatct 14996342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 23274421 - 23274494
Alignment:
Q  5 cctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaaatct 78  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  23274421 cctaattttaacctaaattcagtatttgcttttaccgtattacccctatttaaaatatcaaattgcagaaatct 23274494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35607051 - 35607124
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatatcaaattgcagaa 74  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  35607051 ttgccctaattttaacctaaattcagtgtttgtttttactgtattgcccctgtttaaaatatcaaattgtagaa 35607124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 41844082 - 41843994
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| || | ||| |||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||||    
T  41844082 ttatttattaaagttaacccgaacggtaactgttgccctaattttaacctaaattctatgtttacttttactgtattacctctgtttaa 41843994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 41844285 - 41844193
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||||||| |  |||| ||||||||||||||||| |||||||   || ||  |||||||||||||||| |||||||    
T  41844285 tcttttatttattaaagttaacccatacactaactgttgccctaattttaatctaaattctatgcttacttttactgtattacccatgtttaa 41844193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 16914073 - 16913986
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||  |  ||||| |||||||||||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  16914073 ttatttattaaagttaaccggac-gctaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 16913986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 41843927 - 41843839
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||| |||||||  | ||||| |||||||||||||||||||||||||   || ||  |||||||||||||||||| |||||    
T  41843927 ttatttattaaaattaacccggacgctaactgttgccctaattttaacctaaattatatgcttacttttactgtattacccctatttaa 41843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16914042 - 16913986
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  16914042 ttgccctaattttaacctaaattatatgcttacttttactgtattacccctgtttaa 16913986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 35606956 - 35607019
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttt 145  Q
    |||||||||||||||||||||||   ||||||| | |||| |||||||||||||||||| |||||||    
T  35606956 tcttttatttattaaagttaacc---atgctaacttttgctctaattttaacctaaattcagtgttt 35607019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41844249 - 41844193
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||||||||| |||||||    
T  41844249 ttgccctaattttaatctaaattctatgcttacttttactgtattacccatgtttaa 41844193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41843895 - 41843847
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattaccc 49  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  41843895 ttgccctaattttaacctaaattatatgcttacttttactgtattaccc 41843847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41844050 - 41843994
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  || || ||||||||||||||||  |||||||    
T  41844050 ttgccctaattttaacctaaattctatgtttacttttactgtattacctctgtttaa 41843994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 14994123 - 14994037
Alignment:
Q  85 atttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||  || | ||| ||||||| |||| ||||||||||||   | |||  ||||||| ||||||||||||||||    
T  14994123 atttattaaagttaacctgaacgataactgttgccttaatattaacctaaattatatatttacttttactatattacccctgtttaa 14994037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35606989 - 35607026
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgctttta 38  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  35606989 ttgctctaattttaacctaaattcagtgtttgctttta 35607026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 23274325 - 23274378
Alignment:
Q  7 taattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaaaatat 62  Q
    |||||||||| |||||||| ||||| |||||||||||||| |  ||||||||||||    
T  23274325 taattttaacataaattcaatgcttacttttactgtattatc--tgtttaaaatat 23274378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 13977 - 13892
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtt 168  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||  || ||  |||||||||||||||||||||    
T  13977 ttatttattaaagttaacccagacgctaactgttgccctaattttaaactaaattttatgcttacttttactgtattacccctgtt 13892  T

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Target: scaffold0090; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 13513 - 13425
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||   || ||  ||||||||||||||||||||||||    
T  13513 ttatttattaaagttaacccagacgctaactattgccctaattttaacctaaattctatgcttacttttactgtattacccctgtttaa 13425  T

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Target: scaffold0090; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13481 - 13425
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  13481 ttgccctaattttaacctaaattctatgcttacttttactgtattacccctgtttaa 13425  T

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Target: scaffold0090; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 13675 - 13587
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | ||||| ||||| | ||||||||||||||||||  || ||  |||||||||||||||||| |||||    
T  13675 ttatttattaaagttaacccggacgctaactgttgtcttaattttaacctaaattttatgcttacttttactgtattacccctatttaa 13587  T

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Target: scaffold0090; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 13823 - 13735
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  |  |||| ||||| ||||||||||||||||||||  || ||  ||||||||||||||| ||||||||    
T  13823 ttatttattaaagttaacccggacactaactgttgtcctaattttaacctaaattttatgcttacttttactgtattacctctgtttaa 13735  T

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Target: scaffold0090; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13945 - 13892
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtt 54  Q
    ||||||||||||||| |||||||   ||||| ||||||||||||||||| ||||    
T  13945 ttgccctaattttaaactaaattttatgcttacttttactgtattacccctgtt 13892  T

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Target: scaffold0090; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 13787 - 13735
Alignment:
Q  5 cctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||   ||||| ||||||||||||||||  |||||||    
T  13787 cctaattttaacctaaattttatgcttacttttactgtattacctctgtttaa 13735  T

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Target: scaffold0090; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14100 - 14044
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||| |||||||||||||||||   | ||| ||||||||||||||||| |||||||    
T  14100 ttgccttaattttaacctaaattatatccttacttttactgtattacccctgtttaa 14044  T

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Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 9891 - 9799
Alignment:
Q  79 tcttttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||||| ||| || | ||| |||||||||||||||||||||||||   || ||  ||||||||||||| || |||||||    
T  9891 tcttttatttattaaagttatcccgaaagttaactgttgccctaattttaacctaaattctatgcttacttttactgtattagccgtgtttaa 9799  T

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Target: scaffold0246; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9855 - 9799
Alignment:
Q  1 ttgccctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  9855 ttgccctaattttaacctaaattctatgcttacttttactgtattagccgtgtttaa 9799  T

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Target: scaffold0246; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 9732 - 9644
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaatttagtgttttgttttactgtattacccctgtttaa 171  Q
    ||||||||||||||||||||  | | ||| ||| | |||||||||||||||||||   || ||  ||||| ||||||||||||||||||    
T  9732 ttatttattaaagttaacccggacgttaactgtagtcctaattttaacctaaattctatgcttacttttaatgtattacccctgtttaa 9644  T

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Target: scaffold0246; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 9696 - 9644
Alignment:
Q  5 cctaattttaacctaaattcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||| |||||||    
T  9696 cctaattttaacctaaattctatgcttacttttaatgtattacccctgtttaa 9644  T

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Target: scaffold0891 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2134 - 2077
Alignment:
Q  1 ttgccctaattttaacctaaat-tcagtgcttgcttttactgtattacccgtgtttaa 57  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  2134 ttgccctaattttaacctaaatctcaatgcttacttttactgtattacccttgtttaa 2077  T

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Target: scaffold0891; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 2166 - 2077
Alignment:
Q  83 ttatttattaaagttaacccaaatgctaattgttgccctaattttaacctaaat-ttagtgttttgttttactgtattacccctgtttaa 171  Q
    |||||||||||||||||  || | |||||  ||||||||||||||||||||||| | | || ||  |||||||||||||||| |||||||    
T  2166 ttatttattaaagttaattcagacgctaaccgttgccctaattttaacctaaatctcaatgcttacttttactgtattacccttgtttaa 2077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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