View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_33 (Length: 347)
Name: NF15523_low_33
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 3174852 - 3174587
Alignment:
| Q |
13 |
aatatcagtgatttaaattgatataagtttcttttagggtttaggccttcgttttaactgtgttaaaatatggtgtttggattttgaattatcaataata |
112 |
Q |
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| T |
3174852 |
aatatcagtgatttaaattgatataagtttcttttagggtttaggcctttgttttaactgtgttaaaatatggtgtttggattttgaattatcaataata |
3174753 |
T |
|
| Q |
113 |
agaaaacggtgtattgcacttgtttattgtagtcactgttatccaccgcctcccttctccttttgtatatttaaatcgatttaaattgccgcattttaaa |
212 |
Q |
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| T |
3174752 |
agaaaacggtgtattgcacttgtttactgtagtcactgttatccaccgcctcccttctctttttgtatatttaaatagatttaaattgctgcattttaaa |
3174653 |
T |
|
| Q |
213 |
agtagaatttatttgtgcgaaattagcaatgtatttggttatgataattctaaatca-atatatat |
277 |
Q |
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| T |
3174652 |
agtagaatttatttgtgcgaaattagcaatgtatttggttatgataattctaattcatatatatat |
3174587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 3174540 - 3174479
Alignment:
| Q |
270 |
atatatatcaatcaaattcaaatatggaagcatattaaggcaatataatatggtgttaattt |
331 |
Q |
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| T |
3174540 |
atatatatcaatcaaattcaaatatggaagcatattaaggcaatttaatatggtgttaattt |
3174479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 20965195 - 20965503
Alignment:
| Q |
13 |
aatatcagtgatttaaattgatataagtttcttttagggtttaggccttcgttttaac--tgtgttaaaatatggtgtttggattttgaattatcaataa |
110 |
Q |
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| T |
20965195 |
aatatcagtgatttaaattaacataagtttcttttagggtttaggcttttgttttaactttgtgttaaaatattgtgtttggatcttgaattatcaataa |
20965294 |
T |
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| Q |
111 |
taagaaaacggtgtattgcacttgtttattgtagtcactgttatccaccgcctcccttctccttttg--tatatttaaatcgatttaaattgccgcattt |
208 |
Q |
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| T |
20965295 |
taagaaaatggtttat-----atgtttactct------tgttacccaccgccgcccttctctttttgtatatatttaaattgatttaaattgctccatta |
20965383 |
T |
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| Q |
209 |
taaaagtagaatttatttgtgcg------aaattagcaatgtatttggttatgataattctaaatcaatatatatcaatcaaattcaaatatggaagcat |
302 |
Q |
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| T |
20965384 |
aaaaagtagaacttatttgtgtgaaattcaaattaccaatgtatttggttatgatgatactaattc-atatatatcaattaaattcaaatatcgaaacat |
20965482 |
T |
|
| Q |
303 |
attaaggcaatataatatggt |
323 |
Q |
| |
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||||| |||||||||| |||| |
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| T |
20965483 |
attaatgcaatataatttggt |
20965503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 24539713 - 24539567
Alignment:
| Q |
176 |
tgtatatttaaatcgatttaaattgccgcattttaaaagtagaatttatttgtgcgaaattagcaatgtatttggttatgataattctaaatcaatatat |
275 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| |
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| T |
24539713 |
tgtatatttaaatcgatttaaattgctgcattttagaagtagaatttatttgtgtgaaattactaatgtatttggttatgataatactaattc-atataa |
24539615 |
T |
|
| Q |
276 |
atcaatcaaattcaaatatggaagcatattaaggcaatataatatggt |
323 |
Q |
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|||||||||||||||||||| || |||||||||||| |||||| |||| |
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| T |
24539614 |
atcaatcaaattcaaatatgaaaacatattaaggcattataatttggt |
24539567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 24539800 - 24539733
Alignment:
| Q |
71 |
tgtgttaaaatatggtgtttggattttgaattatcaataataagaaaacggtgtattgcacttgttta |
138 |
Q |
| |
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|||||| ||||||||||||||||| |||||| ||||||||||| |||| ||| ||| |||||||||| |
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| T |
24539800 |
tgtgttcaaatatggtgtttggatcttgaatcatcaataataaaaaaatggtttatcacacttgttta |
24539733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 41522175 - 41522075
Alignment:
| Q |
20 |
gtgatttaaattgatataagtttcttttagggtttaggccttcgttttaac--tgtgttaaaatatggtgtttggattttgaattatcaataataagaaa |
117 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||||||| |
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| T |
41522175 |
gtgatttaaattggtatgagtttcttttagggtttaggccttagttttaactttgtgttagaatatggtgtttgaatcttgaattatcaataataagaaa |
41522076 |
T |
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| Q |
118 |
a |
118 |
Q |
| |
|
| |
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| T |
41522075 |
a |
41522075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 41521927 - 41521879
Alignment:
| Q |
270 |
atatatatcaatcaaattcaaatatggaagcatattaaggcaatataat |
318 |
Q |
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||||||||||||||||| | ||||||||| |||||||| ||||||||| |
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| T |
41521927 |
atatatatcaatcaaataccaatatggaatcatattaactcaatataat |
41521879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 14674112 - 14674001
Alignment:
| Q |
23 |
atttaaattgatataagtttcttttagggtttaggccttcgttttaact--gtgttaaaatatggtgtttggattttgaattatcaataataagaaaacg |
120 |
Q |
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| T |
14674112 |
atttaaatttctatcattttcttttagggttttggcttta-ttttaactttgtgttaaaatatggtgtttgtatcttgaattatcaataataagaaaatg |
14674014 |
T |
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| Q |
121 |
gtgtattgcactt |
133 |
Q |
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| T |
14674013 |
atttattgcactt |
14674001 |
T |
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