View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_34 (Length: 343)
Name: NF15523_low_34
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 110 - 328
Target Start/End: Original strand, 1406209 - 1406427
Alignment:
| Q |
110 |
atataattgaacacaatttaaattattgatgaatatatgtgcatttgaacattagaaaaattgtgattgatgacgttcaaaattatcaagagttcaacat |
209 |
Q |
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| T |
1406209 |
atataattgaacacaatttaaattattgatgaatatatgtgcatttgaacattagaaaaattgtgattgatgacgttcaaaattgactagagtccaacat |
1406308 |
T |
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| Q |
210 |
taaaagaaaataggcctagaaatagatttataaataaggacggttattaccttaaaaatcgattttgtaaagatgggttaggttctacttaaattctaag |
309 |
Q |
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| T |
1406309 |
taaaagaaaataggcctataaatgaatttataaattaggacggttattaccttaaaaatcgattttgtaaagatgggttaggttcggcttaaattctaag |
1406408 |
T |
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| Q |
310 |
attctctacgtaaaaaatg |
328 |
Q |
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| T |
1406409 |
attctctacgtaaaaaatg |
1406427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 1406540 - 1406512
Alignment:
| Q |
16 |
atatagtgaaaagttaggttcaaccctat |
44 |
Q |
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| T |
1406540 |
atatagtgaaaagttaggttcaaccctat |
1406512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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