View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_4 (Length: 640)
Name: NF15523_low_4
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 42464118 - 42463663
Alignment:
| Q |
1 |
ttactaactttccaaagtaaaacgtagttaaagatgagcataacacaattataaaaccgattaaaaacgaaaaatataaagaggaaagctaattgaaaac |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42464118 |
ttactaactttccaaagtaaaacgtagttcaagatgagcataacacaattataaaaccgattaaaaacaaaaaatataaagaggaaagctaattgaaaac |
42464019 |
T |
|
| Q |
101 |
atagttaaggcaatgttatacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgagg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42464018 |
atagttaaggcaaagttatacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgagg |
42463919 |
T |
|
| Q |
201 |
ttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42463918 |
ttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaagcagttgctaa |
42463819 |
T |
|
| Q |
301 |
caggaatatcaatgagtctatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaag |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42463818 |
caggtatatcaatgagtctatagttagctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaag |
42463719 |
T |
|
| Q |
401 |
tataatgccaagtacactctgaatgaataatcacattttcattacacttcagtcac |
456 |
Q |
| |
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| T |
42463718 |
tataatgccaagtacactctgaatgaataatcacattttcattacacttcagtcac |
42463663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 504 - 615
Target Start/End: Complemental strand, 42463615 - 42463504
Alignment:
| Q |
504 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgatagcaattacaatgtagctatgaagcacggatactggacccaacac |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
42463615 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgataacaattacattatagctatgaagcacggatactggacacaacac |
42463516 |
T |
|
| Q |
604 |
gaacactaacac |
615 |
Q |
| |
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|||||||||||| |
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| T |
42463515 |
gaacactaacac |
42463504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 119 - 423
Target Start/End: Complemental strand, 37078065 - 37077761
Alignment:
| Q |
119 |
tacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacga |
218 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| | |||||| ||||| ||||| |
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| T |
37078065 |
tacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaaccacccatgttgctcgcatatgcacgg |
37077966 |
T |
|
| Q |
219 |
gaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtc |
318 |
Q |
| |
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|| | || | ||| | ||| || ||||||||||| || || || |||||||| |||||||| ||||||| ||||||||| ||||| |||||||| || | |
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|
| T |
37077965 |
gacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcc |
37077866 |
T |
|
| Q |
319 |
tatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacact |
418 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| |
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| T |
37077865 |
tatagtttgctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataataccaagcacact |
37077766 |
T |
|
| Q |
419 |
ctgaa |
423 |
Q |
| |
|
||||| |
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|
| T |
37077765 |
ctgaa |
37077761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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