View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_42 (Length: 282)
Name: NF15523_low_42
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 982991 - 983257
Alignment:
| Q |
1 |
attaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtac |
100 |
Q |
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| T |
982991 |
attaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtac |
983090 |
T |
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| Q |
101 |
aagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtag |
200 |
Q |
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| T |
983091 |
aagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtag |
983190 |
T |
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| Q |
201 |
aagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaatttcctatg |
267 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
983191 |
aagatattttaagggtctttctttttaaagtatcttgtgtcttggtcatgcattcaaatttcctatg |
983257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
162 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
261 |
Q |
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||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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| Q |
262 |
cctatgct |
269 |
Q |
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| T |
40413324 |
cctttgct |
40413331 |
T |
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