View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_43 (Length: 274)
Name: NF15523_low_43
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 42285319 - 42285562
Alignment:
| Q |
12 |
agagaatcattgttgagatctattagccagttcatcaactaatttggcaacaatttgtaataataaaattgttgtattaataaaaacaaagcaaggtgag |
111 |
Q |
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| T |
42285319 |
agagaatcattgttgagatctattagccagttcatcagctaatttggcaacaatttgtaataataaaattgttgtattaataaaaacaaagcaaggtgag |
42285418 |
T |
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| Q |
112 |
ggctaagaattaccaaataactgtgtgaatattggtaataagataggaaataagagaaggagtgataaagaaaggggtaagggctacaagggtcagtggc |
211 |
Q |
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| T |
42285419 |
gactaaaaattaccaaataactgtgtgaatattggtaataagataggaaataagagaaggagtgataaagaaaggggtaagggctacaagggtcagtggc |
42285518 |
T |
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| Q |
212 |
cccaaaccatcatctacgaaggacacagtagcctgtgcaatagc |
255 |
Q |
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| T |
42285519 |
cccaaaccatcatctacgaaggacacagtagcctgtgcaatagc |
42285562 |
T |
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