View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_low_45 (Length: 252)
Name: NF15523_low_45
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6352165 - 6351924
Alignment:
| Q |
1 |
tggtatgctagctaggccatgctaatggtcaatttgtcaaaaatgtaatttccatctgtaatataccaattgctagtaaagaactttatggtttttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352165 |
tggtatgctagctaggccatgctaatggtcaatt-gtcaaaaatgtaatttccatctgtaatataccaattgctagtaaagaactttatggtttttgtaa |
6352067 |
T |
|
| Q |
101 |
ttcttgctgtgttggtaaatcacatcgattacatactccactttccattactattcattctaaattatttgaagtaattcacacaaaattacggagccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352066 |
ttcttgctgtgttggtaaatcacatcgattacatactccactttccattactattcattctaaattatttgaagtaattcacacaaaattacggagccct |
6351967 |
T |
|
| Q |
201 |
actcctgagccatcacattttagctacacctttgtatattctt |
243 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6351966 |
actcctgagccatcacattttagttacacctttgtatattctt |
6351924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University