View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_46 (Length: 250)
Name: NF15523_low_46
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9707798 - 9708029
Alignment:
| Q |
1 |
tcctgatagctttgcattgaaatctacatcaatctgtatgttcactgctgaaaaatcattatacattgcctacaagagatataaaagtatatgtcattag |
100 |
Q |
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| T |
9707798 |
tcctgatagctttgcattgaaatctacatcaatctgtatgttcactgctgaaaaatcattatacattgcctacaagagatatacaagtatatgtcagtag |
9707897 |
T |
|
| Q |
101 |
agatagaaacatactaaattaaaagtttgaaatgtaatgtactataagaacataaaacaaatatctactcatgctgtaattattcaatccatattaagaa |
200 |
Q |
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| T |
9707898 |
agatagaaacatactaaattaaaagtttgaaatgtaatgtactataagaacataaaacaaatatctactcatgctataattattcaatctatattaagaa |
9707997 |
T |
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| Q |
201 |
atacacaataactcaagtctcaatggcaatta |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9707998 |
atacacaataactcaagtctcaatggcaatta |
9708029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5793111 - 5793181
Alignment:
| Q |
1 |
tcctgatagctttgcattgaaatctacatcaatctgtatgttcactgctgaaaaatcattatacattgcct |
71 |
Q |
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|||||| ||||||||| |||||||| |||||||| ||||| ||| |||||| |||||||||||||||| |
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| T |
5793111 |
tcctgaaagctttgcactgaaatctttgtcaatctgaatgttagctgttgaaaattcattatacattgcct |
5793181 |
T |
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