View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_47 (Length: 250)
Name: NF15523_low_47
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17682211 - 17682373
Alignment:
| Q |
1 |
tcttttttcttttgggattcgcctaggctcaatgttaagccacagatttaaacaaagtaatatttgataagtggaagcaaaattaaatactattataaac |
100 |
Q |
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| T |
17682211 |
tcttttttcttttgggattcgcctaggctcaatgttaagccacagatttaaacaaagtaatatttgataagtggaagcaaaattaaatactattataaac |
17682310 |
T |
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| Q |
101 |
actctaatagaaaggacaaaatgtatagagtggacgagaaatccaaaacaaaccgacaacaat |
163 |
Q |
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| T |
17682311 |
actctaatagaaaggacaaaatgtatagagtggacgagaaatccaaaacaaaccgacaacaat |
17682373 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 17682726 - 17682795
Alignment:
| Q |
174 |
gttgatctatcaacgtgaaccaaaagaacaccgtacaaaaatgttgcacctaaacaacaaacaaatcaac |
243 |
Q |
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| T |
17682726 |
gttgatctatcaacgtgaaccaaaagaacaccgtataaaaatgttgcacctaaacaacaaacaaatcaac |
17682795 |
T |
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