View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_low_49 (Length: 248)
Name: NF15523_low_49
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 40620903 - 40620716
Alignment:
| Q |
10 |
aaaggcaagtaagaaaatctttaggtattcctaacactagtgatgatgattataataatcaaattagcaactcaattctttattttgactttaaataaag |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
40620903 |
aaaggctagtaagaaaatctttaggtattcctaacactagtgatgatgattataataatcaaattagcaactcaattctttgctttgattttaaatagag |
40620804 |
T |
|
| Q |
110 |
tcttatctaatcgacgatggattgatcttttagattagttgataattaagttagatgccgagttttttaatatcaaaaggaaattagt |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40620803 |
tcttatctagtcgacgatggattgatcttttaaattagttgataattaggttagataccgagttttttaatatcaaaaggaaattagt |
40620716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 40620637 - 40620588
Alignment:
| Q |
199 |
acattagtcattctaaaagaatttcagagcagaaatgtccatttattgat |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
40620637 |
acattagtcattctaaaagaatttcagggcaaaaatgtccatttattgat |
40620588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University