View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_low_5 (Length: 609)
Name: NF15523_low_5
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 32010430 - 32011009
Alignment:
| Q |
18 |
aagtttgaaggctgtacaagtacgagacttttgttcccttatcacatttactgcatgttatgtttctaaaatacaagcttttgtttttctttctcgtttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010430 |
aagtttgaaggctgtacaagtacgagacttttgttcccttatcacatttactgcatgttatgtttctaaaatacaagcttttgtttttctttctcgtttg |
32010529 |
T |
|
| Q |
118 |
tcgatactgtctttctgaattatttcagttctgtagatatgctttgttttgaattaattatgcctattttcaccatgtgtttgatgtaccaagcaaacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010530 |
tcgatactgtctttctgaattatttcagttctgtagatatactttgttttgaattaattatgcctattttcaccatgtgtttgatgtaccaagcaaacta |
32010629 |
T |
|
| Q |
218 |
ttattggctttagatattgcttgtggcacttactctcaaatttatgtagggaataggcttttcttctcccagtccagatatctaggaaatctggcacgac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010630 |
ttattggctttagatattgcttgtggcacttactctcaaatttatgtagggaataggcttttcttctcccagtccagatatctaggaaatctggcacgac |
32010729 |
T |
|
| Q |
318 |
caccacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacaatgaaattgatcctgaagccgtgattagagcatatgaaagcaaccc |
417 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010730 |
cactacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacgatgaaattgatcctgaagccgtgattagagcatatgaaagcaaccc |
32010829 |
T |
|
| Q |
418 |
atctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggctttctgaaagtgaatttctgaacactctgctaaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010830 |
atctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggctttctgaaagtgaatttctgaacactctgctaaga |
32010929 |
T |
|
| Q |
518 |
ggtaattatcttgctagaatagctcgttttctcttgactgtgtttgcatctgattgtgctttgctctgtttgaccatatt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010930 |
ggtaattatcttgctagaatagctcgttttctcttgactgtatttgcatctgattgtgctttgctctgtttgaccatatt |
32011009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 197 - 597
Target Start/End: Original strand, 32022439 - 32022840
Alignment:
| Q |
197 |
tttgatgtaccaagcaaactattattggctttagatattgctt-gtggcacttactctcaaatttatgtagggaataggcttttcttctcccagtccaga |
295 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
32022439 |
tttgatgtacctagaaaactattattggctttagatattgctttgatgcacttactttcaaatttatgtagagaataggcttttcatttcccagtccagg |
32022538 |
T |
|
| Q |
296 |
tatctaggaaatctggcacgaccaccacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacaatgaaattgatcctgaagccgtga |
395 |
Q |
| |
|
|||||||||||||||| ||||| | | ||| |||||||||||||||| || || |||||| ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
32022539 |
tatctaggaaatctggtccgaccgctatgcggttcatctgaagcagagaaatccacttctcctaaagaactttacgatgaaaatgatcctgaagccgtga |
32022638 |
T |
|
| Q |
396 |
ttagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggctttctgaaagtga |
495 |
Q |
| |
|
|||| |||| |||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
32022639 |
ttagggcatttgaaagcaacccgtctcttcatacaaattatttggcattttctgaatatgttaaagcattagtaaaagttggtaggttgtctgaaagtga |
32022738 |
T |
|
| Q |
496 |
atttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtgtttgcatctgattgtgctttgctctgtttgaccata |
595 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| | | |||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32022739 |
atttctgaaaactttgctaagaggtaactatttggttagaattgctcaatttctcttgtctgtgtttgcatgtgattgtgctttgctctgtttgaccata |
32022838 |
T |
|
| Q |
596 |
tt |
597 |
Q |
| |
|
|| |
|
|
| T |
32022839 |
tt |
32022840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 194 - 592
Target Start/End: Complemental strand, 48125621 - 48125212
Alignment:
| Q |
194 |
gtgtttgatgtaccaagcaaactattattggctttagatattgcttgtggcacttactctcaaatttatgtagggaataggcttttcttctccca----- |
288 |
Q |
| |
|
|||||||| || || || ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
48125621 |
gtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaatt-atgtagggaatagtcttttcttctcccaagaga |
48125523 |
T |
|
| Q |
289 |
-------gtccagatatctaggaaatctggcacgaccaccacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacaatgaaattga |
381 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||| ||| |||| ||||||| || ||| ||| |
|
|
| T |
48125522 |
gatcccagtccagatatctaggaaatttggcacggccattgtgtgattcatctgaagctgaggaagcctcttatctcaaaggactttacgatcaaaatga |
48125423 |
T |
|
| Q |
382 |
tcctgaagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtagg |
481 |
Q |
| |
|
||| ||||| ||||| || || |||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48125422 |
tcccgaagctgtgatcctagtatttgaaaggcagccatctctgcatacaaattctttggcattttctgaatatgttaaagcattagtaaaagttggtagg |
48125323 |
T |
|
| Q |
482 |
ctttctgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtgtttgcatctgattgtgctttgc |
581 |
Q |
| |
|
|| |||||||||| ||||| || || || ||||||| | ||| | |||| ||| |||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
48125322 |
ctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcattttcacttgactgtgtttgcatgtgattatgctttgc |
48125223 |
T |
|
| Q |
582 |
tctgtttgacc |
592 |
Q |
| |
|
||||||||||| |
|
|
| T |
48125222 |
tctgtttgacc |
48125212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 290 - 571
Target Start/End: Complemental strand, 48115539 - 48115255
Alignment:
| Q |
290 |
tccagatatctaggaaatctggcacgaccaccacgcgattcatctgaagcagagga---agcctcttctcttaaagaactttacaatgaaattgatcctg |
386 |
Q |
| |
|
||||| ||||||||||| ||||| |||| || ||| |||||||||||||| ||||| || ||||| ||| |||||||||||| | || |||||| | |
|
|
| T |
48115539 |
tccagctatctaggaaacctggcccgacgactacgtgattcatctgaagctgaggaggaagtctcttatctcaaagaactttaccgtcgaaatgatccgg |
48115440 |
T |
|
| Q |
387 |
aagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggctttc |
486 |
Q |
| |
|
|||| ||||||||||||| |||||| | ||||||||||||| ||||||| |||| ||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
48115439 |
aagctgtgattagagcatttgaaagtcagccatctctgcatacaaattctgcggcactttctgaatatgttaaagcattggtgaaagttgataggctgga |
48115340 |
T |
|
| Q |
487 |
tgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtgtttgcatctgat |
571 |
Q |
| |
|
|||||||||||| || | || || ||||||| | ||| ||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
48115339 |
tgaaagtgaattactccagacattgagaagaggtgactattttgctagaactgctcattttctcttgactgtgtttgcatttgat |
48115255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 379 - 559
Target Start/End: Original strand, 48139502 - 48139682
Alignment:
| Q |
379 |
tgatcctgaagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggt |
478 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| | |||||||| |||| | ||||||| ||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
48139502 |
tgatcctcaagccgtgattagagcatttgaaagtcagccatctctccatacagattctttcacattttctgaatatgttaaagcattagtaaaagttgat |
48139601 |
T |
|
| Q |
479 |
aggctttctgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtg |
559 |
Q |
| |
|
||||| |||||| ||||||||||| ||| | ||||||||| | ||| | |||||||| |||| |||||||||||||||| |
|
|
| T |
48139602 |
aggctggatgaaagcgaatttctgaagacttttctaagaggtgactatttggctagaattgctcattttctcttgactgtg |
48139682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 593
Target Start/End: Complemental strand, 48135619 - 48135308
Alignment:
| Q |
284 |
tcccagtccagatatctaggaaatctggcacgaccaccacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacaatgaaattgatc |
383 |
Q |
| |
|
||||||||||| ||||||| |||| || | | || |||||| |||||||||||||| | || || ||||| ||| |||||||||||| | || ||||| |
|
|
| T |
48135619 |
tcccagtccagctatctagaaaatttgtcccaacgaccacgtgattcatctgaagctgcggcagtctcttatctcaaagaactttaccttcgaaatgatc |
48135520 |
T |
|
| Q |
384 |
ctgaagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggct |
483 |
Q |
| |
|
|||||||||||||||| | || ||| || | ||||| ||||||| |||||| | |||| ||||| |||||||||||||||| ||||||||| || ||| |
|
|
| T |
48135519 |
ctgaagccgtgattagggaatttgagagtcatccatccctgcatacaaattcatcggcactttctcaatatgttaaagcattagtaaaagttgatatgct |
48135420 |
T |
|
| Q |
484 |
ttctgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaa--tagctcgttttctcttgactgtgtttgcatctgattgtgctttgc |
581 |
Q |
| |
|
|||||||||||| || | ||| ||| ||||||| | ||| | ||| ||| | ||| ||||||||||||||| ||| ||| |||| ||||| ||| |
|
|
| T |
48135419 |
ggatgaaagtgaattactagagactttgcaaagaggtgactatttggctggaattttactctttttctcttgactgtatttacatgtgatcgtgctctgc |
48135320 |
T |
|
| Q |
582 |
tctgtttgacca |
593 |
Q |
| |
|
| |||||||||| |
|
|
| T |
48135319 |
tatgtttgacca |
48135308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 48139353 - 48139483
Alignment:
| Q |
212 |
aaactattattggctttagatattgcttgtggcacttactctcaaatttatgtaggg---aataggcttttcttctcccagtccagatatctaggaaatc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
48139353 |
aaactattattggcgttagatattgcttgttgcacttactttcaaatttatgcagggaataataggcttttcttctcccagtatagatataaaggaaatc |
48139452 |
T |
|
| Q |
309 |
tggcacgaccaccacgcgattcatctgaagc |
339 |
Q |
| |
|
|||| |||||| | | |||||||||||||| |
|
|
| T |
48139453 |
tggccagaccacaatgtgattcatctgaagc |
48139483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 48139127 - 48139224
Alignment:
| Q |
15 |
aataagtttgaaggctgtacaagtacgagacttttgttcccttatcacatttactgcatgttatgtttctaaaatacaagcttttgtttttctttctc |
112 |
Q |
| |
|
|||||||||||||||| | |||||| | | |||| | |||||| |||||||| | ||||||||||||| |||||| | |||||||||| |||||| |
|
|
| T |
48139127 |
aataagtttgaaggctattcaagtatggaaattttatccccttaccacatttagttcatgttatgtttcaaaaatatacatttttgtttttgtttctc |
48139224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 594
Target Start/End: Original strand, 25252174 - 25252385
Alignment:
| Q |
379 |
tgatcctgaagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggt |
478 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| | |||||||| |||| | ||||||| ||||||| |||||||||||||||||| |||| |||| | |
|
|
| T |
25252174 |
tgatcctcaagccgtgattagagcatttgaaagtcagccatctctccatacagattctttcgcattttttgaatatgttaaagcattagtaaacgttgat |
25252273 |
T |
|
| Q |
479 |
aggctttctgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtgtttgcatctgattgtgctt |
578 |
Q |
| |
|
||||| |||||| ||||||||||| ||| | ||||||||| | ||| | |||||||| |||| |||||||||||||| ||||| ||||||| || |
|
|
| T |
25252274 |
aggctggatgaaagcgaatttctgaagacttttctaagaggtgactatttggctagaattgctcattttctcttgactg----tgcatgtgattgttgtt |
25252369 |
T |
|
| Q |
579 |
tgctctgtttgaccat |
594 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25252370 |
tgctctgtttgaccat |
25252385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 25252025 - 25252128
Alignment:
| Q |
212 |
aaactattattggctttagatattgcttgtggcacttactctcaaatttatgtaggg---aataggcttttcttctcccagtccagatatctaggaaatc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
25252025 |
aaactattattggctttagatattgcttgctgcacttactttcaaatttatgcagggaataataggcttttcttctcccagtatagatataaaggaaatc |
25252124 |
T |
|
| Q |
309 |
tggc |
312 |
Q |
| |
|
|||| |
|
|
| T |
25252125 |
tggc |
25252128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 593
Target Start/End: Complemental strand, 25245977 - 25245708
Alignment:
| Q |
326 |
gattcatctgaagcagaggaagcctcttctcttaaagaactttacaatgaaattgatcctgaagccgtgattagagcatatgaaagcaacccatctctgc |
425 |
Q |
| |
|
|||||||||||||| | | || ||||| ||| |||||||||||| | || ||||||||||||||||||||| | || ||| || | ||||| |||| |
|
|
| T |
25245977 |
gattcatctgaagctgcagcagtctcttatctcaaagaactttaccttcgaaatgatcctgaagccgtgattagggaatttgagagtcatccatccctgc |
25245878 |
T |
|
| Q |
426 |
ataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtaggctttctgaaagtgaatttctgaacactctgctaagaggtaatta |
525 |
Q |
| |
|
||| |||||| | |||| ||||| |||||||||||||||| ||||||||| || ||| |||||||||||| || | ||| ||| ||||||| | || |
|
|
| T |
25245877 |
atacaaattcatcggcactttctcaatatgttaaagcattagtaaaagttgataagctggatgaaagtgaattactagagactttgcaaagaggtgacta |
25245778 |
T |
|
| Q |
526 |
tcttgctagaa--tagctcgttttctcttgactgtgtttgcatctgattgtgctttgctctgtttgacca |
593 |
Q |
| |
|
| | ||| ||| | ||| ||||||||||||||| ||| ||| |||| ||||| |||| |||||||||| |
|
|
| T |
25245777 |
tttggctggaattttactctttttctcttgactgtatttacatgtgatcgtgctctgctatgtttgacca |
25245708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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