View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_low_51 (Length: 244)
Name: NF15523_low_51
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 53671991 - 53672211
Alignment:
| Q |
17 |
atttttaatcatagcatttcttgtgttgcaattgtgttgttttaatatatcatcttctggc-ttttttcatataaaaaagaaaatctatcttaaccatcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53671991 |
atttttaatcatagcatttcttgtgttgcaattgtgttgttttaatatatcatcttctggccttttttcatataaaaaagaaaata-atcttaaccatcc |
53672089 |
T |
|
| Q |
116 |
atccattgtgaagattaattgttctcatgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttgtaatcttcaactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53672090 |
atccattgtgaagattaattgttctcatgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttctaatcttcaactt |
53672189 |
T |
|
| Q |
216 |
cattacaacatactcctctctg |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
53672190 |
cattacaacatactcctctctg |
53672211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University