View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_52 (Length: 241)
Name: NF15523_low_52
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_52 |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 6570 - 6462
Alignment:
| Q |
104 |
ttttcagggtgttgagagtggtggattcattgatagagtctataaaaagattagtaagcgaaaaggagaagnnnnnnnnttatcctagaggagaaaggag |
203 |
Q |
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| T |
6570 |
ttttgagggtgttgagagtggtggattcattcatagagtctataaaaagattaataagcgaaaaggagaaggaaaaaaaatatcctagaggagaaaggag |
6471 |
T |
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| Q |
204 |
aggaatgga |
212 |
Q |
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| T |
6470 |
agggatgga |
6462 |
T |
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Target: scaffold0179; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 6666 - 6629
Alignment:
| Q |
9 |
agcatcacagacacaaattcaccaataatcaaacaccc |
46 |
Q |
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| T |
6666 |
agcaacacagacacaaattcaccaataatcaaacaccc |
6629 |
T |
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