View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_53 (Length: 235)

Name: NF15523_low_53

Description: NF15523

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15523_low_53

[»] chr8 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 188; E-Value: 1e-102

Query Start/End: Original strand, 19 - 214

Target Start/End: Complemental strand, 36643893 - 36643698

Alignment:

Q	19	ataagttgtttctgtaactttcccaaacagtcttataaagtctcacaagtatgtatctcagactgtcgtaaataagctcatataaaccaatccaaacaga	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36643893	ataagttgtttccgtaactttcccaaacagtcttataaagtctcacaagtatgtatctcagactgtcgtaaataagctcaaataaaccaatccaaacaga	36643794	T

Q	119	tgttaagcccttcaaataactatcttgaacatgatatgctagaaatgatcacaaagctatatcaaacaaccatctaatatctatacagttctctcc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36643793	tgttaagcccttcaaataactatcttgaacatgatatgctagaaatgatcacaaagctatatcaaacaaccatctaatatctatacagttctctcc	36643698	T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 130 - 178

Target Start/End: Original strand, 43172260 - 43172308

Alignment:

Q	130	tcaaataactatcttgaacatgatatgctagaaatgatcacaaagctat	178	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43172260	tcaaataaatatcttgaacatgatatgctagaaaagatcacaaagctat	43172308	T

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