View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_low_54 (Length: 234)
Name: NF15523_low_54
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 1558868 - 1559077
Alignment:
| Q |
9 |
acatcatcataaatgttggagttaagattagataagactatcctcattaatttataaacgacttcattagtttacctcttattaaattcggagaatttta |
108 |
Q |
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| T |
1558868 |
acatcatcataaatgttggagctaagatcagataaaactaccctcgttaatttaggagcgactttattagtttgcctcttattacactcggagaattttg |
1558967 |
T |
|
| Q |
109 |
aaaactattctaaaataactgtctaca-tgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttac |
207 |
Q |
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|||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1558968 |
aaaactatcctaaaatagctgcctactctgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttac |
1559067 |
T |
|
| Q |
208 |
aatataattt |
217 |
Q |
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|||||||||| |
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| T |
1559068 |
aatataattt |
1559077 |
T |
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