View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_57 (Length: 224)

Name: NF15523_low_57
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_57
NF15523_low_57
[»] chr6 (53 HSPs)
chr6 (10-224)||(27593185-27593399)
chr6 (36-224)||(27678780-27678968)
chr6 (10-224)||(27677779-27677993)
chr6 (36-224)||(31284122-31284310)
chr6 (36-224)||(27706567-27706755)
chr6 (38-223)||(26622812-26622997)
chr6 (38-223)||(26728790-26728975)
chr6 (34-224)||(27698659-27698849)
chr6 (38-224)||(28780975-28781161)
chr6 (34-223)||(26861448-26861637)
chr6 (34-224)||(28786110-28786300)
chr6 (34-224)||(28792231-28792421)
chr6 (36-224)||(27229066-27229254)
chr6 (34-220)||(27338234-27338420)
chr6 (34-220)||(27398974-27399160)
chr6 (38-224)||(27725010-27725196)
chr6 (38-224)||(26802278-26802464)
chr6 (34-224)||(27718544-27718734)
chr6 (34-224)||(26655821-26656011)
chr6 (34-224)||(26761792-26761982)
chr6 (38-224)||(27611167-27611353)
chr6 (62-213)||(26884023-26884174)
chr6 (34-224)||(27604870-27605066)
chr6 (91-224)||(27531362-27531495)
chr6 (34-184)||(26823678-26823822)
chr6 (34-224)||(26646305-26646501)
chr6 (34-224)||(26752273-26752469)
chr6 (100-224)||(25579617-25579741)
chr6 (100-224)||(26055824-26055948)
chr6 (100-224)||(26075794-26075918)
chr6 (100-224)||(25481640-25481764)
chr6 (100-224)||(26048743-26048867)
chr6 (100-224)||(26069912-26070036)
chr6 (121-176)||(27427816-27427871)
chr6 (100-224)||(25538438-25538562)
chr6 (100-224)||(26142763-26142887)
chr6 (132-224)||(26635620-26635712)
chr6 (132-224)||(26741586-26741678)
chr6 (106-197)||(26974956-26975047)
chr6 (33-194)||(26949489-26949653)
chr6 (33-162)||(28139372-28139501)
chr6 (100-221)||(28234462-28234583)
chr6 (133-197)||(27665309-27665373)
chr6 (121-224)||(26959084-26959187)
chr6 (133-224)||(29825958-29826049)
chr6 (121-224)||(27214336-27214439)
chr6 (121-224)||(27234789-27234892)
chr6 (10-40)||(27678720-27678750)
chr6 (10-40)||(27706785-27706815)
chr6 (121-197)||(25071578-25071654)
chr6 (136-224)||(26617260-26617348)
chr6 (136-224)||(26723188-26723276)
chr6 (131-195)||(29617589-29617653)
[»] scaffold1254 (1 HSPs)
scaffold1254 (34-224)||(82-272)
[»] scaffold0419 (1 HSPs)
scaffold0419 (34-224)||(7357-7547)
[»] scaffold0349 (3 HSPs)
scaffold0349 (34-224)||(14520-14710)
scaffold0349 (38-224)||(3587-3773)
scaffold0349 (34-129)||(8061-8156)
[»] scaffold0277 (2 HSPs)
scaffold0277 (38-224)||(13797-13983)
scaffold0277 (34-224)||(4836-5026)
[»] chr4 (7 HSPs)
chr4 (34-223)||(18724238-18724427)
chr4 (34-195)||(18699581-18699742)
chr4 (38-223)||(18731657-18731842)
chr4 (33-223)||(18679720-18679910)
chr4 (38-195)||(18655658-18655815)
chr4 (121-176)||(17989250-17989305)
chr4 (121-176)||(18073684-18073739)
[»] chr8 (1 HSPs)
chr8 (36-223)||(29273936-29274123)
[»] chr1 (3 HSPs)
chr1 (35-223)||(268510-268698)
chr1 (34-194)||(28127862-28128016)
chr1 (34-224)||(28164514-28164704)
[»] scaffold0003 (1 HSPs)
scaffold0003 (121-176)||(59492-59547)
[»] scaffold0038 (1 HSPs)
scaffold0038 (100-221)||(34623-34744)
[»] chr2 (1 HSPs)
chr2 (124-224)||(17993849-17993949)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 27593399 - 27593185
Alignment:
Q  10 agaccacaaaaacttctcattcatattctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27593399 agaccacaaaaacttctcattcatattctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtt 27593300  T
Q  110 tcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27593299 tcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaag 27593200  T
Q  210 aggagatgaaatcac 224  Q
    |||| ||||||||||    
T  27593199 aggaaatgaaatcac 27593185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 27678780 - 27678968
Alignment:
Q  36 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27678780 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 27678879  T
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  27678880 ttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcac 27678968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 27677993 - 27677779
Alignment:
Q  10 agaccacaaaaacttctcattcatattctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  27677993 agaccacaaaaacttctcattcatattctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatt 27677894  T
Q  110 tcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||| ||||||  |  |||  ||||||||    
T  27677893 tcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaag 27677794  T
Q  210 aggagatgaaatcac 224  Q
    ||| |||||||||||    
T  27677793 aggggatgaaatcac 27677779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 31284122 - 31284310
Alignment:
Q  36 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 135  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||  | |||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  31284122 tctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggt 31284221  T
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||  ||||||||||| |||||||||||    
T  31284222 ttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaatcac 31284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 27706755 - 27706567
Alignment:
Q  36 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27706755 tctcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggt 27706656  T
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||| |||||||||||||||||| ||  ||||||||||||| |||||| ||||||  |  |||  ||||||||| | |||||||||||    
T  27706655 ttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcac 27706567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 26622812 - 26622997
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| | | |||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  26622812 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26622911  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    ||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||   ||  ||||||||||| || |||||||    
T  26622912 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatca 26622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 26728790 - 26728975
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| | | |||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  26728790 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26728889  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    ||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||   ||  ||||||||||| || |||||||    
T  26728890 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatca 26728975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 27698849 - 27698659
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||  | ||  |||||||| ||| ||||||| || || | |||||||||| |||    
T  27698849 attctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacg 27698750  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  27698749 gttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 27698659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 28780975 - 28781161
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||||| ||||||||||||| ||||| |||||| ||  | ||  |||||||| ||||||||||| || || | |||||||||  |||||||    
T  28780975 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 28781074  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  28781075 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 28781161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 26861448 - 26861637
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    ||||| ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||| |    
T  26861448 attctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatg 26861547  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    |||| ||||| ||||||||||||||||||||||||||||||||  |||||| ||| |||||   ||  ||||||||||| ||||||||||    
T  26861548 gttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatca 26861637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 28786110 - 28786300
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    ||||| |||||||| |||||||||||||| ||| ||||| |||||||||  | ||  |||||||| ||||||||||| || || | |||||||||  |||    
T  28786110 attcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacg 28786209  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  28786210 gttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 28786300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 28792231 - 28792421
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    ||||| |||||||| |||||||||||||| ||| ||||| |||||||||  | ||  |||||||| ||||||||||| || || | |||||||||  |||    
T  28792231 attcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacg 28792330  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  28792331 gttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 28792421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 27229066 - 27229254
Alignment:
Q  36 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 135  Q
    |||||||||||| |||||||||||||||||| ||||| |||||| ||  | ||  |||||||| ||||| ||||| || || | |||||||||| |||||    
T  27229066 tctcatggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggt 27229165  T
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    || ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||| ||||||||    
T  27229166 tttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcac 27229254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 27338420 - 27338234
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||||||||||| |||||||||| |||||||||||| ||  | ||||||||| || ||||||||||| || |  | ||||||||  ||||    
T  27338420 attctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacg 27338321  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaa 220  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | |||| |||||||||||||||    
T  27338320 gttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaa 27338234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 27399160 - 27398974
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||||||||||| |||||||||| |||||||||||| ||  | ||||||||| || ||||||||||| || |  | ||||||||  ||||    
T  27399160 attctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacg 27399061  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaa 220  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | |||| |||||||||||||||    
T  27399060 gttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaa 27398974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 27725196 - 27725010
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||  | ||  |||||||| ||||| ||||| || || | |||||||||| |||||||    
T  27725196 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 27725097  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  27725096 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 27725010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 26802278 - 26802464
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  26802278 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 26802377  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     || |||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  26802378 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 26802464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 27718734 - 27718544
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| |||||||||||||| ||| ||||| | ||| |||  | ||  |||||||| ||||||||||| || || | |||||||||| ||     
T  27718734 attctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcaca 27718635  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  27718634 gttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 27718544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 26655821 - 26656011
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| |||||||||||||| ||| ||||| |||||||||  |  ||||||||||| ||||||||||| || || | |||||| ||| |||    
T  26655821 attctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacg 26655920  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||| | || | |||||||||||||| |||||  |||||||||||||||||    
T  26655921 gttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcac 26656011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 26761792 - 26761982
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| |||||||||||||| ||| ||||| |||||||||  |  ||||||||||| ||||||||||| || || | |||||| ||| |||    
T  26761792 attctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacg 26761891  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||| | || | |||||||||||||| |||||  |||||||||||||||||    
T  26761892 gttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcac 26761982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 27611353 - 27611167
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||||| | ||||||||||  ||||| |||||||||  | ||  |||||||| ||||||||||| || || | |||||||||  |||||||    
T  27611353 tcatggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 27611254  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||| ||||||||||||||||||    
T  27611253 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcac 27611167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 26884023 - 26884174
Alignment:
Q  62 cttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctct 161  Q
    ||||| ||||| |||||||||  | ||  |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctct 26884122  T
Q  162 tactgacaagggaatcaacacctacattgatgacaatggtcttcaaagagga 213  Q
    |||| ||||||||||| |||||| ||||||||| |||  ||||| |||||||    
T  26884123 tactaacaagggaatccacaccttcattgatgataatcatcttccaagagga 26884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 27605066 - 27604870
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccac------ttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactc 127  Q
    ||||||||||||||||||| ||||||||| ||| |      |||| |||||||||  | ||  |||||||| ||||| ||||| || || | ||||||||    
T  27605066 attctcatggctatgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactc 27604967  T
Q  128 ggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||  | |||| ||||||||| |||| ||||| ||||||||||||||||||    
T  27604966 gatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcac 27604870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 27531495 - 27531362
Alignment:
Q  91 taccaagtattcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattg 190  Q
    |||||||| ||||||||||| || ||    ||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||||    
T  27531495 taccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattg 27531396  T
Q  191 atgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||||||| ||||||||||||||||||||||||    
T  27531395 atgacaatgatcttcaaagaggagatgaaatcac 27531362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 34 - 184
Target Start/End: Original strand, 26823678 - 26823822
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    ||||||||||||||||| ||| ||||||||||      | |||| ||||||| |||||||||||| || |||||||| |||||   |||||||||||| |    
T  26823678 attctcatggctatgcagtcaacttcctcttc------agtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatg 26823771  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacct 184  Q
      || |||||||||||||||||||||||||| |||||||||||| ||||||    
T  26823772 aatttaccggcaatctctacaaggctcttacagacaagggaatccacacct 26823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 26646305 - 26646501
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttc------aatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactc 127  Q
    |||||||||||||||||||| ||||||| |||| ||||      ||||||||| |  | ||  ||||| || |||||||  ||||| || ||||||||||    
T  26646305 attctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactc 26646404  T
Q  128 ggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |  ||||||| || ||  |||||||||||||||||||||||||||||||  |||||| |||||||||   || |||| | |||||||||||||||||    
T  26646405 gtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcac 26646501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 26752273 - 26752469
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttc------aatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactc 127  Q
    |||||||||||||||||||| ||||||| |||| ||||      ||||||||| |  | ||  ||||| || |||||||  ||||| || ||||||||||    
T  26752273 attctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactc 26752372  T
Q  128 ggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |  ||||||| || ||  |||||||||||||||||||||||||||||||  |||||| |||||||||   || |||| | |||||||||||||||||    
T  26752373 gtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcac 26752469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 25579617 - 25579741
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||||||||||||||| |||||||||||  ||  ||| ||||| |||||||| |||||||||  ||||||||||||    |||| | ||||||| ||||    
T  25579617 ttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgataatg 25579716  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||    
T  25579717 atcttcaaagaggagatgaaatcac 25579741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 26055824 - 26055948
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  |||||||||||| || || | ||||||||| ||||    
T  26055824 ttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatg 26055923  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||    
T  26055924 atcttcaaagaggagatgaaatcac 26055948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 26075794 - 26075918
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  |||||||||||| || || | ||||||||| ||||    
T  26075794 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatg 26075893  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||    
T  26075894 atcttcaaagaggagatgaaatcac 26075918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 25481640 - 25481764
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  ||||||||||||    || | ||||||||| ||||    
T  25481640 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatg 25481739  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||    
T  25481740 atcttcaaagaggagatgaaatcac 25481764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 26048743 - 26048867
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||| | ||||||||||||    || | ||||||||| ||||    
T  26048743 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatg 26048842  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     |||| |||||||||||||||||||    
T  26048843 atcttgaaagaggagatgaaatcac 26048867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 26069912 - 26070036
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||| | ||||||||||||    || | ||||||||| ||||    
T  26069912 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatg 26070011  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     |||| |||||||||||||||||||    
T  26070012 atcttgaaagaggagatgaaatcac 26070036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 27427871 - 27427816
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaat 176  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  27427871 gacactcggtacggtttcaccggcaatctcttgaaggctcttattgacaagggaat 27427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 25538438 - 25538562
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    |||||||||||||| || |||||||||||  ||   || ||||| |||||||| |||||||||  |||||||||||| |  || | ||| ||||| ||||    
T  25538438 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgataatg 25538537  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     |||| |||||||||||||||||||    
T  25538538 atcttgaaagaggagatgaaatcac 25538562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 26142763 - 26142887
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    |||||||||||||| || |||||||||||  ||   || ||||| |||||||| |||||||||  ||||||||||||    || | ||||||||| ||||    
T  26142763 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatg 26142862  T
Q  200 gtcttcaaagaggagatgaaatcac 224  Q
     |||| |||||||||||||||||||    
T  26142863 atcttgaaagaggagatgaaatcac 26142887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 26635620 - 26635712
Alignment:
Q  132 cggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||||||||||| || ||||| || |||||| ||||||| ||||||||||||| |||||||||||| |  ||| ||| ||| |||||||||||    
T  26635620 cggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcac 26635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 26741586 - 26741678
Alignment:
Q  132 cggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||||||||||| || ||||| || |||||| ||||||| ||||||||||||| |||||||||||| |  ||| ||| ||| |||||||||||    
T  26741586 cggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcac 26741678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 26974956 - 26975047
Alignment:
Q  106 agtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaa 197  Q
    ||||||||||| |  |||||||| | |||||||||||| || ||||| || |||||| ||||||| |||||||||| || ||||||||||||    
T  26974956 agtttcagaggtaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaa 26975047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 26949489 - 26949653
Alignment:
Q  33 tattctcatggctatgcaatcac---cttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcgg 129  Q
    |||||||||||||||||||||||   ||||||| || |||||  |||| ||||||| ||| |   | || ||| | ||||||||||| |  ||||||||     
T  26949489 tattctcatggctatgcaatcactttcttcctcctctacttccttttcttatgatttcaactttgatgtgttcattagtttcagaggtaccgacactcga 26949588  T
Q  130 tacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatga 194  Q
    | |||||||||||| |||||||| || |||||  ||||||||||||||   |||| |||||||||    
T  26949589 ttcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatga 26949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 28139372 - 28139501
Alignment:
Q  33 tattctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 132  Q
    |||| |||||||| ||||| ||||||| ||||| |||||  | |||||||  | || |||| | || || ||||| |||||||| ||||||||||| | |    
T  28139372 tattttcatggctttgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttc 28139471  T
Q  133 ggtttcaccggcaatctctacaaggctctt 162  Q
    |||||||| || ||||||||||| ||||||    
T  28139472 ggtttcactggaaatctctacaaagctctt 28139501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 28234462 - 28234583
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||| ||||| ||||| ||||||||||| || ||||| ||||  |||||||| |  ||||||  | ||||||||||| |||||| |||||||||||  |    
T  28234462 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgacaggg 28234561  T
Q  200 gtcttcaaagaggagatgaaat 221  Q
      |||||| |||||||||||||    
T  28234562 agcttcaaggaggagatgaaat 28234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 27665373 - 27665309
Alignment:
Q  133 ggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaa 197  Q
    ||||||||||| || ||||| ||||||||| ||||||| |||||| |||||| ||||||||||||    
T  27665373 ggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgacaa 27665309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 26959084 - 26959187
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaa 220  Q
    |||||||| | | |||||||||| || ||||| || |||||| ||||||| |||||| |||||| |||||||||||| |  ||| ||| ||| |||||||    
T  26959084 gacactcgattcagtttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagcttaaaaaaggggatgaaa 26959183  T
Q  221 tcac 224  Q
    ||||    
T  26959184 tcac 26959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 29825958 - 29826049
Alignment:
Q  133 ggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||| ||||||||||||||||| ||||| |||||||||  |||   ||||| |||||||||||| |  ||||||||||| || ||||||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcac 29826049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 27214336 - 27214439
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaa 220  Q
    ||||||||  ||||||||||||| |||||||| || ||||||  |||||| ||||||   |||| |||||||||||| |  ||||| ||||| || ||||    
T  27214336 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaa 27214435  T
Q  221 tcac 224  Q
    ||||    
T  27214436 tcac 27214439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 27234892 - 27234789
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaa 220  Q
    ||||||||  ||||||||||||| |||||||| || ||||||  |||||| ||||||   |||| |||||||||||| |  ||||| ||||| || ||||    
T  27234892 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaa 27234793  T
Q  221 tcac 224  Q
    ||||    
T  27234792 tcac 27234789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 27678720 - 27678750
Alignment:
Q  10 agaccacaaaaacttctcattcatattctca 40  Q
    |||||||||||||||||||||||||||||||    
T  27678720 agaccacaaaaacttctcattcatattctca 27678750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 27706815 - 27706785
Alignment:
Q  10 agaccacaaaaacttctcattcatattctca 40  Q
    |||||||||||||||||||||||||||||||    
T  27706815 agaccacaaaaacttctcattcatattctca 27706785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 25071578 - 25071654
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaa 197  Q
    |||||||| | |||||| ||||| ||||| || || |||||| ||||||| |||||| ||||||  |||||||||||    
T  25071578 gacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaa 25071654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 26617260 - 26617348
Alignment:
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||||||||||||||| || ||||||  |||||| ||| ||   |||| |||||||||||| |  ||||| ||||| |||||||||||    
T  26617260 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcac 26617348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 26723188 - 26723276
Alignment:
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||||||||||||||| || ||||||  |||||| ||| ||   |||| |||||||||||| |  ||||| ||||| |||||||||||    
T  26723188 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcac 26723276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 29617589 - 29617653
Alignment:
Q  131 acggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgac 195  Q
    ||||||||| | ||||||||||||| || || | ||| || ||||||||||||| ||||||||||    
T  29617589 acggtttcatccgcaatctctacaaagcactgaatgaaaaaggaatcaacaccttcattgatgac 29617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 272 - 82
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||||||||||||| |||||||| ||||| |||| ||||  | ||  |||||||| ||||| ||||| || || | |||||||||  |||    
T  272 attctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacg 173  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  172 gttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 7357 - 7547
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||||||||||||| |||||||| ||||| |||| ||||  | ||  |||||||| ||||| ||||| || || | |||||||||  |||    
T  7357 attctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacg 7456  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  7457 gttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 7547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 14710 - 14520
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||  | ||  |||||||| ||| ||||||| || || | |||||||||| |||    
T  14710 attctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacg 14611  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  14610 gttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 14520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 3773 - 3587
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||  | ||  |||||||| ||||| ||||| || || | |||||||||| |||||||    
T  3773 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 3674  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  3673 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcac 3587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 8156 - 8061
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcgg 129  Q
    |||||||||||||| |||||||||||||| ||| ||||| | ||| |||  | ||  |||||||| ||||||||||| || || | ||||||||||    
T  8156 attctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 13983 - 13797
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 137  Q
    ||||||||||||||| ||||||||||||| ||||| |||||| ||  | ||  |||||||| ||||||||||| || || | |||||||||  |||||||    
T  13983 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 13884  T
Q  138 caccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
     ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  13883 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 13797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 5026 - 4836
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    ||||| |||||||| |||||||||||||| ||| ||||| |||||||||  | ||  |||||||| ||||||||||| || || | |||||||||  |||    
T  5026 attcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacg 4927  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  4926 gttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcac 4836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 18724427 - 18724238
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 132  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || |||||||||||  ||    
T  18724427 attctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggcagtgacactcgtaac 18724329  T
Q  133 ggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    ||||| || ||  |||||||||||||||||||||||||||||||| |||||| ||||||||||  ||  || |||||||| ||||||||||    
T  18724328 ggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatca 18724238  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 18699742 - 18699581
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 132  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || | |||||||||  ||    
T  18699742 attctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggcactgacactcgtgac 18699644  T
Q  133 ggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgac 195  Q
    ||||| || ||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  18699643 ggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18699581  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 18731842 - 18731657
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtt 136  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || |||||||||||  ||||||    
T  18731842 tcatggctatgcaatcaccttcctcatcctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggtt 18731744  T
Q  137 tcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    | || ||| |||||||||  ||||||||||||||||||||| |||||| ||||||||||  ||  || |||||||| ||||||||||    
T  18731743 ttactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatca 18731657  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 18679910 - 18679720
Alignment:
Q  33 tattctcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggta 131  Q
    |||| ||||||||||||||||||||||||| | | ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || |||||||||||  |    
T  18679910 tattttcatggctatgcaatcaccttcctcattctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18679812  T
Q  132 cggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    |||||| || ||  ||||||||||||||||||||||||| |||||| |||||| ||||||||||  ||  || |||||||| ||||||||||    
T  18679811 cggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatca 18679720  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 18655815 - 18655658
Alignment:
Q  38 tcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtt 136  Q
    ||||||||| ||||||||||||||| ||| ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || |||||||||||  ||||||    
T  18655815 tcatggctaggcaatcaccttcctcatcctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggtt 18655717  T
Q  137 tcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgac 195  Q
    | || ||  |||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  18655716 ttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18655658  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 17989305 - 17989250
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaat 176  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  17989305 gacactcggtacggtttcaccggcaatctcttgaaggctcttattgacaagggaat 17989250  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 18073684 - 18073739
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaat 176  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  18073684 gacactcggtacggtttcaccggcaatctcttgaaggctcttattgacaagggaat 18073739  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 29274123 - 29273936
Alignment:
Q  36 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 135  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||||  | ||  ||||| || |||||||  || |||||  ||||||||||  |||||    
T  29274123 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggt 29274024  T
Q  136 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    || |  ||| ||||||||||| |||||||||||||||||||| |||||| |||||||||   ||  ||||||||||| ||||||||||    
T  29274023 tttattggccatctctacaagactcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatca 29273936  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 268698 - 268510
Alignment:
Q  35 ttctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacgg 134  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||  |     ||||| || |||||||  ||||||||  ||||||||||  | ||    
T  268698 ttctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgaggg 268599  T
Q  135 tttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    ||| |  ||| |||||||||||||||||||||||||||||||| |||||| |||||||||   ||  ||||||||||| ||||||||||    
T  268598 ttttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatca 268510  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 28128016 - 28127862
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||||||||||| |||||||||      |||||||||||  | || ||||||||| |||||||| ||||| || |||||||||||  |||    
T  28128016 attctcatggctatgcaatcacattcctcttc------aatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacg 28127923  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatga 194  Q
    ||||||| ||| ||||||||||||| |||  ||||||||||||| |||| | |||||||||    
T  28127922 gtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatga 28127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 28164704 - 28164514
Alignment:
Q  34 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 133  Q
    |||||||||||||| | ||| | |||||||||| |||||||||||||||  | || ||||||||| ||||||||||| || || |||||||||||  |||    
T  28164704 attctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtgacg 28164605  T
Q  134 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatcac 224  Q
    ||||||| ||| ||||||| ||||| |||   |||||||||||  |||| | |||||||||   || |||| | |||||||| ||||||||    
T  28164604 gtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatgattgtgatcttgagagaggagaagaaatcac 28164514  T

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Target: scaffold0003 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 59492 - 59547
Alignment:
Q  121 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaat 176  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  59492 gacactcggtacggtttcaccggcaatctcttgaaggctcttattgacaagggaat 59547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 34623 - 34744
Alignment:
Q  100 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatg 199  Q
    ||||| ||||| ||||| ||||||||||| || ||||| ||||  |||||||| |  ||||||  | ||||||||||| |||||| |||||||||||  |    
T  34623 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgacaggg 34722  T
Q  200 gtcttcaaagaggagatgaaat 221  Q
      |||||| |||||||||||||    
T  34723 agcttcaaggaggagatgaaat 34744  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 17993949 - 17993849
Alignment:
Q  124 actcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacacctacattgatgacaatggtcttcaaagaggagatgaaatca 223  Q
    ||||| || ||||||||||| |||||||| || |||||| |||||||||||||    |||| ||| |||||||| |  ||||| ||||| ||||||||||    
T  17993949 actcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatca 17993850  T
Q  224 c 224  Q
    |    
T  17993849 c 17993849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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