View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_low_6 (Length: 591)
Name: NF15523_low_6
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 21 - 576
Target Start/End: Complemental strand, 50149054 - 50148499
Alignment:
| Q |
21 |
aatgccagaaatagttttgtttctgtttctgctcttgaatgatttactaatgatatacatcaagtccacaattccatttgttttttagttttatctattt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50149054 |
aatgccagaaatagttttgtttctgtttctgctcttgaatgatttactaatgatatacatcaagtccacaattccatttgttttttagttttatctattt |
50148955 |
T |
|
| Q |
121 |
tacattagcctgataagaaccaagtaaagatgcaagatttaaaattcagtacatgtggtgttttaccacaagttattgtatctaacacaatcaccaaatg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148954 |
tacattagcctgataagaaccaagtaaagatgcaagatttaaaattcagtacatgtggtgttttaccacaagttattgtatctaacacaatcaccaaatg |
50148855 |
T |
|
| Q |
221 |
tttatgttgctgtcaagttatctgatctccccactgtcaaataatgcatgtggcagattttagttttttgctccattattcttctgatttggatacgtat |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148854 |
tttatgttgctgtgaagttatctgatctccccactgtcaaataatgcatgtggcagattttagttttttgctccattattcttctgatttggatacgtat |
50148755 |
T |
|
| Q |
321 |
cttgaacatttcagttgaaatgtaagatttgaaacacgcataggacataacatggacacaagcattatcaataatgattctgctaactttctccaagagg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50148754 |
cttgaacatttcagttgaaatgtaagatttgaaacacgcataggacataacatggacacaagcattatcaataatgattctgctaactttctctaagagg |
50148655 |
T |
|
| Q |
421 |
atttaattgtatctcattgattacgtataatgttgtgtcctagttaatagttatgctactcttttttcttctgttgttatgtttgataattcactgattc |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148654 |
atttaattgtatctcattgattacgtataatgttgtgtcctagttaatagttatgctactcttttttcttctgttgttatgtttgataattcactgatta |
50148555 |
T |
|
| Q |
521 |
tgaaatcagccactgcattctatattttgtcatttcatacgcatttattctctgtg |
576 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50148554 |
tgaaatcagccactacattctatattttgtcatttcatacacatttattctctgtg |
50148499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University