View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_low_7 (Length: 582)

Name: NF15523_low_7
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_low_7
NF15523_low_7
[»] chr3 (7 HSPs)
chr3 (89-573)||(7622843-7623326)
chr3 (174-288)||(7660366-7660486)
chr3 (504-556)||(40557620-40557671)
chr3 (443-477)||(14271923-14271957)
chr3 (443-477)||(44953157-44953191)
chr3 (503-536)||(43774191-43774224)
chr3 (441-477)||(55195855-55195891)
[»] chr5 (4 HSPs)
chr5 (436-536)||(9963422-9963522)
chr5 (503-536)||(3102183-3102216)
chr5 (440-477)||(13754071-13754108)
chr5 (511-551)||(26409246-26409285)
[»] chr4 (6 HSPs)
chr4 (430-477)||(22478723-22478770)
chr4 (503-536)||(9084765-9084798)
chr4 (503-536)||(31480277-31480310)
chr4 (503-536)||(36008281-36008314)
chr4 (503-536)||(48512205-48512238)
chr4 (503-536)||(56531292-56531325)
[»] chr6 (3 HSPs)
chr6 (503-553)||(28970158-28970207)
chr6 (503-536)||(2945602-2945635)
chr6 (503-532)||(4078672-4078701)
[»] scaffold2098 (1 HSPs)
scaffold2098 (503-536)||(669-702)
[»] chr7 (3 HSPs)
chr7 (503-536)||(20527485-20527518)
chr7 (503-536)||(21285409-21285442)
chr7 (436-477)||(44843756-44843797)
[»] chr1 (4 HSPs)
chr1 (503-536)||(9527432-9527465)
chr1 (503-536)||(47939254-47939287)
chr1 (503-535)||(17954915-17954947)
chr1 (446-530)||(36824311-36824395)
[»] chr8 (1 HSPs)
chr8 (503-555)||(10292340-10292391)


Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 89 - 573
Target Start/End: Complemental strand, 7623326 - 7622843
Alignment:
Q  89 atagaagaatgagaaatagggtgcttggctgtttttcttgtactgcacagaaactccaagggatctgttcatattaaattatcagtgataatttagttcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7623326 atagaagaatgagaaatagggtgcttggctgtttttcttgtactgcacagaaactccaagggatctgttcatattaaattatcagtgataatt-agttcg 7623228  T
Q  189 aaggattaaaattcgtaacctgaaaaaaccccacactttgatattatttttcttgccttaattagaatttgttaacatgaaggtcaaccactttatttga 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7623227 aaggattaaaattcgtaacctgaaaaaaccccacactttgatattatttttcttgccttaattaggatttgttaacatgaaggtcaaccactttatttga 7623128  T
Q  289 cccataggtataattgccggtaaaccataaactaagttagctagattcttcctcctcgaagggttggggacaagatatatattgaagaatgtgtacatga 388  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7623127 tccataggtataattgccggtaaaccataaactaagttagctagatacttcctcctcgaagggttggggacaagatatatattgaagaatgtatacatga 7623028  T
Q  389 ttttaaaaaataattttagagtattaannnnnnnnggtcgagtaacatagtagttagaattcacattataagatgaataaatgaggtgtgtgaagatcaa 488  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| | ||||    
T  7623027 ttttaaaaaataattttagagtattaattttttttagtcgagtaacatagtagttagaattcacattatgaggtgaataaataaggtgtctgaggttcaa 7622928  T
Q  489 acttcaacatttgaatataacaatgcattgtccatgccaactgagctaacgctcacggagactttttataatattgctagtataa 573  Q
    || ||||||| ||||||||||||| |||||||| ||  ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  7622927 acctcaacatctgaatataacaattcattgtccctgttaactgagctaacgctcacggaaactttttatagtattgctagtataa 7622843  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 7660366 - 7660486
Alignment:
Q  174 tgataatttagttcgaaggatt-----aaaattcgtaacctgaaaaaaccccacactttgat-attatttttcttgccttaattagaatttgttaacatg 267  Q
    ||||||||||||||||||||||     || |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||  ||||||||    
T  7660366 tgataatttagttcgaaggatttgaaaaatattcgtaacctgaaaaaatcccacactttgataattttttttcttgccttaattagaattcattaacatg 7660465  T
Q  268 aaggtcaaccactttatttga 288  Q
     ||||||||||||||||||||    
T  7660466 taggtcaaccactttatttga 7660486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 40557620 - 40557671
Alignment:
Q  504 tataacaatgcattgtccatgccaactgagctaacgctcacggagacttttta 556  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  40557620 tataacaatgcattgtccttgccaactgag-ttatgctcacggagacttttta 40557671  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 477
Target Start/End: Original strand, 14271923 - 14271957
Alignment:
Q  443 tagaattcacattataagatgaataaatgaggtgt 477  Q
    |||||||||| ||||||||||||||||||||||||    
T  14271923 tagaattcaccttataagatgaataaatgaggtgt 14271957  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 477
Target Start/End: Original strand, 44953157 - 44953191
Alignment:
Q  443 tagaattcacattataagatgaataaatgaggtgt 477  Q
    |||||||||||||||||| ||||||||||||||||    
T  44953157 tagaattcacattataaggtgaataaatgaggtgt 44953191  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 43774224 - 43774191
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  43774224 atataacaatgcattgtccctgccaactgagcta 43774191  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 55195855 - 55195891
Alignment:
Q  441 gttagaattcacattataagatgaataaatgaggtgt 477  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  55195855 gttataattcaccttataagatgaataaatgaggtgt 55195891  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 536
Target Start/End: Complemental strand, 9963522 - 9963422
Alignment:
Q  436 tagtagttagaattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaactgagct 535  Q
    |||| |||||||||||| ||||||| ||||||| || || ||  |||| || |||  ||||   || ||||||||||||||||||| |||||||||||||    
T  9963522 tagtggttagaattcactttataaggtgaataagtggggggtccgaagttcgaaccccaacccctgcatataacaatgcattgtccctgccaactgagct 9963423  T
Q  536 a 536  Q
    |    
T  9963422 a 9963422  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 3102183 - 3102216
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  3102183 atataacaatgcattgtccctgccaactgagcta 3102216  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 13754108 - 13754071
Alignment:
Q  440 agttagaattcacattataagatgaataaatgaggtgt 477  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13754108 agttagaattcaccttataagatgaataaatggggtgt 13754071  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 551
Target Start/End: Complemental strand, 26409285 - 26409246
Alignment:
Q  511 atgcattgtccatgccaactgagctaacgctcacggagact 551  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  26409285 atgcattgtccataccaactgagctaa-gctcacggagact 26409246  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 22478723 - 22478770
Alignment:
Q  430 gtaacatagtagttagaattcacattataagatgaataaatgaggtgt 477  Q
    ||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  22478723 gtaacctagtagttagaattcaccttataaggtgaataaatggggtgt 22478770  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 9084798 - 9084765
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  9084798 atataacaatgcattgtccctgccaactgagcta 9084765  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 31480310 - 31480277
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  31480310 atataacaatgcattgtccctgccaactgagcta 31480277  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 36008314 - 36008281
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  36008314 atataacaatgcattgtccctgccaactgagcta 36008281  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 48512238 - 48512205
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  48512238 atataacaatgcattgtccctgccaactgagcta 48512205  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 56531292 - 56531325
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  56531292 atataacaatgcattgtccttgccaactgagcta 56531325  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 553
Target Start/End: Complemental strand, 28970207 - 28970158
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttt 553  Q
    |||||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  28970207 atataacaatacattgtccctgccaactgagct-acgctcacggggacttt 28970158  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 2945635 - 2945602
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  2945635 atataacaatgcattgtccctgccaactgagcta 2945602  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 532
Target Start/End: Complemental strand, 4078701 - 4078672
Alignment:
Q  503 atataacaatgcattgtccatgccaactga 532  Q
    ||||||||||||||||||||||||||||||    
T  4078701 atataacaatgcattgtccatgccaactga 4078672  T

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Target: scaffold2098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 669 - 702
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  669 atataacaatgcattgtccctgccaactgagcta 702  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 20527485 - 20527518
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  20527485 atataacaatgcattgtccctgccaactgagcta 20527518  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 21285409 - 21285442
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  21285409 atataacaatgcattgtccctgccaactgagcta 21285442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 44843797 - 44843756
Alignment:
Q  436 tagtagttagaattcacattataagatgaataaatgaggtgt 477  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  44843797 tagtggttagaattcaccttataagatgaataaatggggtgt 44843756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 9527465 - 9527432
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  9527465 atataacaatgcattgtccctgccaactgagcta 9527432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 47939254 - 47939287
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagcta 536  Q
    ||||||||||||||||||| ||||||||||||||    
T  47939254 atataacaatgcattgtccctgccaactgagcta 47939287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 535
Target Start/End: Original strand, 17954915 - 17954947
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagct 535  Q
    ||||||||||||||||||| |||||||||||||    
T  17954915 atataacaatgcattgtccctgccaactgagct 17954947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 530
Target Start/End: Complemental strand, 36824395 - 36824311
Alignment:
Q  446 aattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaact 530  Q
    ||||||| || ||||||||||||||||||||| ||| | || ||||||||| | |  ||||||||||  ||| ||| ||||||||    
T  36824395 aattcactttttaagatgaataaatgaggtgtctgaggttcgaacttcaacttctacatataacaatatattatccctgccaact 36824311  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 10292391 - 10292340
Alignment:
Q  503 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttttt 555  Q
    |||||| |||||||||||| ||||||||||||| | |||||||| ||||||||    
T  10292391 atataataatgcattgtccctgccaactgagct-atgctcacggggacttttt 10292340  T

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