View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15524_low_1 (Length: 581)

Name: NF15524_low_1
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15524_low_1
NF15524_low_1
[»] chr7 (4 HSPs)
chr7 (240-567)||(32196197-32196524)
chr7 (1-176)||(32195958-32196133)
chr7 (325-413)||(7500917-7501005)
chr7 (414-474)||(7500838-7500898)
[»] chr1 (1 HSPs)
chr1 (301-413)||(43059679-43059791)
[»] chr8 (2 HSPs)
chr8 (325-413)||(10007314-10007402)
chr8 (414-474)||(10007421-10007481)
[»] chr3 (2 HSPs)
chr3 (325-413)||(47615122-47615210)
chr3 (414-474)||(47615229-47615289)
[»] chr6 (2 HSPs)
chr6 (340-410)||(7315865-7315935)
chr6 (414-474)||(7315957-7316017)
[»] chr5 (2 HSPs)
chr5 (325-413)||(18486449-18486537)
chr5 (414-474)||(18486556-18486616)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 240 - 567
Target Start/End: Original strand, 32196197 - 32196524
Alignment:
Q  240 tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196197 tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg 32196296  T
Q  340 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggattcttggtctacggtggtggtggaag 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32196297 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggtttcttggtctacggtggtggtggaag 32196396  T
Q  440 ttagcttggggtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttc 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196397 ttagcttggggtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttc 32196496  T
Q  540 agccatgagtgagggtttagcacaggtt 567  Q
    ||||||||||||||||||||| ||||||    
T  32196497 agccatgagtgagggtttagcgcaggtt 32196524  T

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Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 32195958 - 32196133
Alignment:
Q  1 taaaacctcactaaccttagtagaatctaatcagcattcggcgtgccaccagaaatgcgcactccagactgagcagttcgccgccgagtcctagagggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32195958 taaaacctcactaaccttagtagaatctaatcagcattcggcgtgccaccagaaatgcgcactccagactgagcagttcgccgccgagtcctagagggaa 32196057  T
Q  101 gaatgttatccaaatcaacctccgcaagtggatcatcagaaaaatcactgtcactaccagaaacattgccgtcaga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196058 gaatgttatccaaatcaacctccgcaagtggatcatcagaaaaatcactgtcactaccagaaacattgccgtcaga 32196133  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 7501005 - 7500917
Alignment:
Q  325 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 413  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  7501005 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgtcggaagagcaattgacggtggagggaagttcgga 7500917  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 7500898 - 7500838
Alignment:
Q  414 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 474  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  7500898 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 7500838  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 43059679 - 43059791
Alignment:
Q  301 tcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtgg 400  Q
    |||||| |||||||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  43059679 tcatcgaaattctcctcgtcttcgtcctcttcgtcatcttcgtcagtgttattttcgggttcgttgttgggaacgacgtcggaagagcaattgacggtgg 43059778  T
Q  401 tgggaagttcgga 413  Q
     || |||||||||    
T  43059779 aggtaagttcgga 43059791  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 10007314 - 10007402
Alignment:
Q  325 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 413  Q
    ||||| ||||| || ||||| ||||  ||||||||||||||||||||| ||||||| |||||  |||||||||||| ||||||||||||    
T  10007314 tcgtcctcgtcgtcttcgtcggtgtcattttcgggttcgttgttgggatcggcgtcagaagagcaattgacggtggagggaagttcgga 10007402  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 10007421 - 10007481
Alignment:
Q  414 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 474  Q
    ||||||||||||| |||| || |  |||||||||||| |||||||||| ||||||||||||    
T  10007421 ttcttggtctacgatggttgtagttgttagcttgggggttttgttgggaaggtgatgggtt 10007481  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 47615122 - 47615210
Alignment:
Q  325 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 413  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  47615122 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 47615210  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 47615229 - 47615289
Alignment:
Q  414 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 474  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  47615229 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 47615289  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 7315865 - 7315935
Alignment:
Q  340 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttc 410  Q
    ||||||||||  ||||||||||||||||||||| ||| |||||||||  |||||||||||| |||||||||    
T  7315865 tcgtcagtgtcattttcgggttcgttgttgggatcggtgtcggaagagcaattgacggtggagggaagttc 7315935  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 7315957 - 7316017
Alignment:
Q  414 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 474  Q
    ||||||||||||||||||||  |  |||| ||||||| |||| ||||| ||||||||||||    
T  7315957 ttcttggtctacggtggtggcagttgttaccttgggggtttttttgggaaggtgatgggtt 7316017  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 18486449 - 18486537
Alignment:
Q  325 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 413  Q
    ||||| ||||| || ||||||||||  |||||| |||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  18486449 tcgtcctcgtcgtcttcgtcagtgtcattttcgagttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 18486537  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 18486556 - 18486616
Alignment:
Q  414 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 474  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  18486556 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 18486616  T

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