View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15524_low_2 (Length: 565)

Name: NF15524_low_2
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15524_low_2
NF15524_low_2
[»] chr8 (2 HSPs)
chr8 (75-555)||(25105696-25106172)
chr8 (466-520)||(31678640-31678694)
[»] chr7 (2 HSPs)
chr7 (454-535)||(43119210-43119291)
chr7 (451-487)||(38365740-38365776)
[»] chr6 (2 HSPs)
chr6 (454-553)||(21917346-21917445)
chr6 (466-551)||(18239230-18239314)
[»] chr2 (4 HSPs)
chr2 (457-553)||(3960838-3960934)
chr2 (452-533)||(8442614-8442695)
chr2 (460-532)||(26674105-26674177)
chr2 (497-537)||(37940453-37940493)
[»] chr4 (2 HSPs)
chr4 (455-551)||(8019952-8020048)
chr4 (483-549)||(7593130-7593196)
[»] chr3 (2 HSPs)
chr3 (455-522)||(18391943-18392010)
chr3 (466-529)||(54697932-54697995)
[»] chr5 (4 HSPs)
chr5 (452-522)||(34822050-34822119)
chr5 (488-532)||(15069732-15069776)
chr5 (303-339)||(31926687-31926723)
chr5 (466-510)||(33160714-33160758)
[»] chr1 (3 HSPs)
chr1 (466-512)||(34604632-34604678)
chr1 (480-551)||(46034007-46034078)
chr1 (453-553)||(27580733-27580833)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 75 - 555
Target Start/End: Complemental strand, 25106172 - 25105696
Alignment:
Q  75 atgtatatttttaaggaaataattaaataagtattacaaatttatttatgcagtgtaattcgtttggtttagttttagaaaaatgatctaaaatccaatc 174  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25106172 atgtgtatttttaaggaaataatttaataagtattacaaatttatttatgcagtgtaattcgtttggtttagttttagaaaaatgatctaaaatccaatc 25106073  T
Q  175 taattagtgatctccaagaaacgaacgtatctaatattatttgattttgttctatcctccgggtttcaagatttggtttgcttccttc-----nnnnnnn 269  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  25106072 taattagtgaattccaagaaacgaacatatctaatattatttgattttgttctatcctccgggtttcaagatttggtttgcttccttcaaaaaaaataaa 25105973  T
Q  270 nnnnngatttggtttgcatttttgtggagacaaatatacgaaatgacaataatcattgaaaattcacacatacaagtcgagatttgaaccccaatcttga 369  Q
          |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||       |||||||||||||||||||     
T  25105972 aaaataatttggtttgtatttttttggagacaaatatacgaaatgacaataatcattgaaaactcacatatac-------gatttgaaccccaatcttgg 25105880  T
Q  370 tattcaacctaacaaatttggatcgatttgaatttgaaagnnnnnnnnngttgtatcttgaaatttagtgaggttgaaaagtatgagttgagattatctc 469  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25105879 tattcaacctaacaaatttggatcgatttgaatttgaaa--taaaaaaaattgtatcttgaaatttagtgaggatgaaaagtatgagttgagattatctc 25105782  T
Q  470 cattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatatgtaa 555  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  25105781 cattttctaaaataaatggtaacatccattactatagttttgtagtaaatacactatataaatgcacatatgtctagaatatgtaa 25105696  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 31678640 - 31678694
Alignment:
Q  466 tctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaata 520  Q
    ||||||||| |||||||||||||  || || ||||||||||||||| ||||||||    
T  31678640 tctccatttcttaaaataaatggacatctccattactatagttttgaagtaaata 31678694  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 454 - 535
Target Start/End: Original strand, 43119210 - 43119291
Alignment:
Q  454 gagttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgca 535  Q
    ||||||||||| ||||||||||||||||||||||| || ||  |||||||||||||||||||||||||| ||||||||||||    
T  43119210 gagttgagattctctccattttttaaaataaatggcaacattcattactatagttttgtagtaaatacatgatataaatgca 43119291  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 38365776 - 38365740
Alignment:
Q  451 tatgagttgagattatctccattttttaaaataaatg 487  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  38365776 tatgagttaagattatcttcattttttaaaataaatg 38365740  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 21917346 - 21917445
Alignment:
Q  454 gagttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatatgt 553  Q
    ||||||||||  ||||||||| ||||||||||| | | | || |||||||||||||||||||||||||| ||||||||| |||  || ||||||||||||    
T  21917346 gagttgagatattctccatttcttaaaataaattgcagtttccattactatagttttgtagtaaatacatgatataaatacacatatttctagaatatgt 21917445  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 18239314 - 18239230
Alignment:
Q  466 tctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatat 551  Q
    |||||||||| || ||||||||  |||||| ||||||||| |||||| |||||||||  ||||||||||||| || | ||||||||    
T  18239314 tctccattttctacaataaatgacaatatccattactatatttttgt-gtaaatacattatataaatgcacgtatttttagaatat 18239230  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 553
Target Start/End: Complemental strand, 3960934 - 3960838
Alignment:
Q  457 ttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatatgt 553  Q
    |||||||  |||||||||| ||  ||||||| |||| || |||||||||||||||| ||||||||| ||||||||||||| ||| |||| |||||||    
T  3960934 ttgagatcctctccattttctacgataaatgataatgtccattactatagttttgtggtaaatacatgatataaatgcacacatttctataatatgt 3960838  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 8442614 - 8442695
Alignment:
Q  452 atgagttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatg 533  Q
    ||||||| ||||| |||| |||| ||  ||||||||| ||| |  ||||||||| |||||||||||||||| ||||||||||    
T  8442614 atgagttcagattctctcaatttctttgaataaatggcaattttcattactataattttgtagtaaatacatgatataaatg 8442695  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 532
Target Start/End: Original strand, 26674105 - 26674177
Alignment:
Q  460 agattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaat 532  Q
    ||||| |||||||||  ||||||||||| || | || |||||||| |||||| |||||||||| |||||||||    
T  26674105 agattctctccatttcctaaaataaatgatagtgtccattactatcgttttggagtaaatacatgatataaat 26674177  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 537
Target Start/End: Complemental strand, 37940493 - 37940453
Alignment:
Q  497 attactatagttttgtagtaaatacacgatataaatgcacg 537  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  37940493 attactatagttttgtagtaaatacatgatatgaatacacg 37940453  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 551
Target Start/End: Complemental strand, 8020048 - 8019952
Alignment:
Q  455 agttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatat 551  Q
    |||||||||  |||| ||||| |||||||||||| ||| |  |||||||||||||||  ||||||||| |||||||||||||  || ||||||||||    
T  8020048 agttgagatcctctcaattttctaaaataaatggcaatgttcattactatagttttgatgtaaatacatgatataaatgcacatatttctagaatat 8019952  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 7593196 - 7593130
Alignment:
Q  483 aaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaat 549  Q
    |||||| ||| | |||||||||||||||| |||||||| | ||||||||||||| ||| || |||||    
T  7593196 aaatggaaatgttaattactatagttttgaagtaaatatatgatataaatgcacacatttcaagaat 7593130  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 18392010 - 18391943
Alignment:
Q  455 agttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaataca 522  Q
    |||||||||| |||||||||  || ||||||||| || | | ||||||||||||||||||||||||||    
T  18392010 agttgagattctctccatttcctataataaatggcaaaacccattactatagttttgtagtaaataca 18391943  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 529
Target Start/End: Complemental strand, 54697995 - 54697932
Alignment:
Q  466 tctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatata 529  Q
    |||| ||||||||| |||||| | ||||||  ||||||||||||||||||||||| | ||||||    
T  54697995 tctctattttttaagataaattgaaatatccgttactatagttttgtagtaaatatatgatata 54697932  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 522
Target Start/End: Complemental strand, 34822119 - 34822050
Alignment:
Q  452 atgagttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaataca 522  Q
    ||||||||| ||| |||||||||  |||||||||||  ||| || ||||||||||||||||||||||||||    
T  34822119 atgagttgaaattctctccatttcctaaaataaatgc-aatttctattactatagttttgtagtaaataca 34822050  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 15069732 - 15069776
Alignment:
Q  488 gtaatatcaattactatagttttgtagtaaatacacgatataaat 532  Q
    |||||||| |||||  ||||||||||||||||||| |||||||||    
T  15069732 gtaatatctattaccgtagttttgtagtaaatacatgatataaat 15069776  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 31926723 - 31926687
Alignment:
Q  303 atatacgaaatgacaataatcattgaaaattcacaca 339  Q
    |||||||||||||||||||| |||||||| |||||||    
T  31926723 atatacgaaatgacaataattattgaaaactcacaca 31926687  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 510
Target Start/End: Complemental strand, 33160758 - 33160714
Alignment:
Q  466 tctccattttttaaaataaatggtaatatcaattactatagtttt 510  Q
    |||||||||| |||||||||||| ||| || ||||||||||||||    
T  33160758 tctccattttctaaaataaatggcaatgtccattactatagtttt 33160714  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 34604678 - 34604632
Alignment:
Q  466 tctccattttttaaaataaatggtaatatcaattactatagttttgt 512  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  34604678 tctccattttttaaaataaatggtgatatctattactattgttttgt 34604632  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 46034007 - 46034078
Alignment:
Q  480 aataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatat 551  Q
    |||||||| ||||||| |||| |||||||| |  ||||||||| |||||||||||||  || ||||||||||    
T  46034007 aataaatgataatatccattattatagtttcgatgtaaatacatgatataaatgcacctatttctagaatat 46034078  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 553
Target Start/End: Complemental strand, 27580833 - 27580733
Alignment:
Q  453 tgagttgagattatctccattttttaaaataaatggtaatatcaattactatagttttgtagtaaatacacgatataaatgcacgcatgtctagaatatg 552  Q
    |||||||||||  |||  ||||| |||||||||||  ||| || ||||||||| ||||||| ||||||||  |||||||| |||  || | |||||||||    
T  27580833 tgagttgagatcctctttattttctaaaataaatgacaatgtctattactataattttgtaataaatacataatataaatacacatatttttagaatatg 27580734  T
Q  553 t 553  Q
    |    
T  27580733 t 27580733  T

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