View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15524_low_3 (Length: 553)

Name: NF15524_low_3
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15524_low_3
NF15524_low_3
[»] chr4 (13 HSPs)
chr4 (141-537)||(19428953-19429333)
chr4 (16-395)||(45161982-45162361)
chr4 (16-395)||(45166874-45167253)
chr4 (41-395)||(42468442-42468795)
chr4 (41-395)||(42470771-42471124)
chr4 (70-395)||(50855774-50856088)
chr4 (213-395)||(13774151-13774333)
chr4 (213-396)||(13776449-13776631)
chr4 (70-288)||(8739249-8739468)
chr4 (422-537)||(19422187-19422302)
chr4 (302-400)||(8739467-8739564)
chr4 (134-215)||(43179560-43179641)
chr4 (225-287)||(24908157-24908219)
[»] chr1 (11 HSPs)
chr1 (16-395)||(29833079-29833456)
chr1 (16-395)||(734582-734959)
chr1 (22-395)||(2403838-2404202)
chr1 (41-395)||(8933552-8933913)
chr1 (213-395)||(10909108-10909289)
chr1 (193-395)||(29833852-29834043)
chr1 (213-395)||(10911352-10911532)
chr1 (213-388)||(13011698-13011871)
chr1 (22-135)||(2416660-2416774)
chr1 (210-395)||(2409960-2410136)
chr1 (52-123)||(419213-419284)
[»] chr7 (21 HSPs)
chr7 (16-395)||(36464216-36464604)
chr7 (16-395)||(8414493-8414871)
chr7 (16-390)||(3052003-3052379)
chr7 (16-395)||(3932518-3932896)
chr7 (16-395)||(3934757-3935135)
chr7 (41-395)||(8733498-8733850)
chr7 (71-395)||(19786621-19786963)
chr7 (71-395)||(19788927-19789269)
chr7 (41-395)||(42678574-42678934)
chr7 (213-395)||(8731179-8731359)
chr7 (243-390)||(18395344-18395489)
chr7 (305-395)||(16496956-16497045)
chr7 (305-390)||(16535143-16535227)
chr7 (305-390)||(16630435-16630519)
chr7 (165-387)||(19093855-19094092)
chr7 (213-289)||(28610348-28610424)
chr7 (251-385)||(21769082-21769213)
chr7 (16-127)||(16497078-16497189)
chr7 (16-127)||(16535260-16535371)
chr7 (16-127)||(16630291-16630402)
chr7 (344-388)||(42680808-42680852)
[»] chr8 (6 HSPs)
chr8 (16-395)||(21268123-21268510)
chr8 (16-395)||(36379468-36379848)
chr8 (16-385)||(36377193-36377563)
chr8 (41-395)||(4876820-4877173)
chr8 (41-395)||(4879148-4879501)
chr8 (41-395)||(24519156-24519510)
[»] chr2 (13 HSPs)
chr2 (16-395)||(31486686-31487066)
chr2 (16-390)||(31488970-31489345)
chr2 (17-395)||(23859781-23860184)
chr2 (16-398)||(29801777-29802162)
chr2 (213-395)||(42275559-42275739)
chr2 (213-395)||(42277785-42277965)
chr2 (250-390)||(8995078-8995208)
chr2 (41-390)||(34576612-34576969)
chr2 (296-395)||(5164154-5164252)
chr2 (310-390)||(15730012-15730091)
chr2 (336-395)||(39816092-39816151)
chr2 (20-77)||(34576903-34576960)
chr2 (16-112)||(15729886-15729981)
[»] chr5 (12 HSPs)
chr5 (16-395)||(23164257-23164621)
chr5 (16-395)||(11849920-11850288)
chr5 (16-395)||(11852178-11852546)
chr5 (16-395)||(22600715-22601084)
chr5 (16-287)||(37207675-37207946)
chr5 (146-401)||(37215396-37215641)
chr5 (41-401)||(1779219-1779581)
chr5 (213-390)||(21743622-21743789)
chr5 (16-203)||(1779645-1779840)
chr5 (326-395)||(37207998-37208067)
chr5 (337-395)||(15469197-15469255)
chr5 (250-288)||(1779180-1779218)
[»] scaffold0599 (1 HSPs)
scaffold0599 (176-395)||(1579-1798)
[»] chr3 (6 HSPs)
chr3 (27-289)||(18966219-18966494)
chr3 (213-395)||(4530835-4531017)
chr3 (219-395)||(4533138-4533314)
chr3 (17-85)||(39578247-39578315)
chr3 (155-212)||(8535521-8535578)
chr3 (141-213)||(1701107-1701179)
[»] scaffold0050 (4 HSPs)
scaffold0050 (134-395)||(31574-31826)
scaffold0050 (134-395)||(29261-29511)
scaffold0050 (16-88)||(29137-29209)
scaffold0050 (16-88)||(31455-31527)
[»] scaffold1361 (1 HSPs)
scaffold1361 (258-395)||(1-137)
[»] scaffold0008 (2 HSPs)
scaffold0008 (305-395)||(88439-88528)
scaffold0008 (16-88)||(73080-73152)
[»] scaffold0098 (1 HSPs)
scaffold0098 (301-395)||(3710-3804)
[»] chr6 (2 HSPs)
chr6 (70-281)||(21199146-21199376)
chr6 (300-395)||(20642264-20642358)
[»] scaffold0312 (1 HSPs)
scaffold0312 (52-123)||(11287-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (337-389)||(64082-64132)
scaffold0045 (337-389)||(71414-71464)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 141 - 537
Target Start/End: Complemental strand, 19429333 - 19428953
Alignment:
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429333 tagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaatg 19429234  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttc 340  Q
    | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19429233 gagagcctacctagagtagtataaataaggctcaccaccaagtgtttagatatattcaagatactcaagcattgaatcattcaagtaatatatacttttc 19429134  T
Q  341 tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagtcacttatccaaacagagtatagtctagtgtgtaaacttgcctta 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||               |||||||||||||||||||||    
T  19429133 tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagccactt-tc---------------ctagtgtgtaaacttgcctta 19429050  T
Q  441 ataatatctggtgttactacatttggccccatggaagagaaagctgctgcttccggtgcaggtttggtaccaacaacagttgttgttggatatattt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429049 ataatatctggtgttactacatttggccccatggaagagaaagctgctgcttccggtgcaggtttggtaccaacaacagttgttgttggatatattt 19428953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 45161982 - 45162361
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |||||||||  |  |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  45161982 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataagaaag 45162081  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45162082 ctactagacactactaaataagcactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt 45162181  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattg 314  Q
    || ||||||||||||||||||||||| ||| || |||||| |||||||||||||| || ||||| ||||||| |  ||| ||||| ||  |||| |||||    
T  45162182 ttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattg 45162281  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  45162282 aatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 45162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 45166874 - 45167253
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |||||||||  |  |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45166874 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataaggaag 45166973  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45166974 ctactagacactactaaataagcactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt 45167073  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattg 314  Q
    || ||||||||||||||||||||||| ||| || |||||| |||||||||||||| || ||||| ||||||| |  ||| ||||| ||  |||| |||||    
T  45167074 ttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattg 45167173  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||| ||||||| |||||| ||| |||||||||||| ||||||||||||||  || |||||||||||||| ||||    
T  45167174 aatcattcaaataatata-acttttttttaagaatattagagtgtttctctattttcggtaactttccttttgtccatgag 45167253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 42468795 - 42468442
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| || ||||||||| || ||||||||||||||||||||| |||||||||||||||     
T  42468795 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcac 42468696  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42468695 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 42468596  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattgaatcattcaagtaatatatactttt 339  Q
    | |||||| ||||||||||||||||||||| || ||| | ||||||| |  ||| | ||| ||  |||| ||||||| ||||||||||||||| ||||||    
T  42468595 gagagccttcctagagtagtataaataaggctcaccatctagtgttttg-gatactgaagcatcatcaagcattgaagcattcaagtaatata-actttt 42468498  T
Q  340 ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42468497 ctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 42468442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 42471124 - 42470771
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| || ||||||||| || ||||||||||||||||||||| |||||||||||||||     
T  42471124 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcac 42471025  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42471024 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 42470925  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattgaatcattcaagtaatatatactttt 339  Q
    | |||||| ||||||||||||||||||||| || ||| | ||||||| |  ||| | ||| ||  |||| ||||||| ||||||||||||||| ||||||    
T  42470924 gagagccttcctagagtagtataaataaggctcaccatctagtgttttg-gatactgaagcatcatcaagcattgaagcattcaagtaatata-actttt 42470827  T
Q  340 ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42470826 ctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 42470771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 70 - 395
Target Start/End: Complemental strand, 50856088 - 50855774
Alignment:
Q  70 aagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcattagggaagtcttgatttttctagatcctt 169  Q
    ||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  50856088 aagaataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatcctt 50855989  T
Q  170 ctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataag 269  Q
    ||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  50855988 ctaggcttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataag 50855889  T
Q  270 gttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattt 369  Q
    |||| ||||| ||||||| |          |||  |||| ||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||    
T  50855888 gttcaccacctagtgttttg----------gatcatcaagcattgaatcattcaagtaatata-acttttcctcgagaatattagagtgtttctctattt 50855800  T
Q  370 tctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||||||| ||||    
T  50855799 tctctacctttccttttgtccctgag 50855774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 13774151 - 13774333
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaacca 311  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| | ||| ||  |||| ||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagca 13774250  T
Q  312 ttgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  13774251 ttgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13774333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 213 - 396
Target Start/End: Original strand, 13776449 - 13776631
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || || | ||||||||||  | |||||| | | |||| |||    
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcaccgctaagtgtttaggcacattcaa-agaatcaagcat 13776547  T
Q  313 tgaatcattcaagtaatatatacttttc-tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagt 396  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  13776548 tgaatcattcaagtaatata-acttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagt 13776631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 8739249 - 8739468
Alignment:
Q  70 aagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaa--taagcattagggaagtcttgatttttctagatcc 167  Q
    ||||||||| | || |||| ||||||||||   ||||||||||||||||||| |||| ||||||  || ||| ||||||| |||| || |||||||||||    
T  8739249 aagaataatgtggatgtctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtttctagatcc 8739347  T
Q  168 ttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaata 267  Q
    |||||||  |||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||  |||||| |||||||| ||||||| |    
T  8739348 ttctagtcatatgaactagagcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctagagttgtataaaca 8739447  T
Q  268 aggttccccaccaagtgttta 288  Q
    ||| |  ||||||||||||||    
T  8739448 aggcttaccaccaagtgttta 8739468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 422 - 537
Target Start/End: Complemental strand, 19422302 - 19422187
Alignment:
Q  422 agtgtgtaaacttgccttaataatatctggtgttactacatttggccccatggaagagaaagctgctgcttccggtgcaggtttggtaccaacaacagtt 521  Q
    ||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19422302 agtgtgtaaacatgccttaataatatctggcgttattatatttggccccatggaagagaaagctgctgcttctggtgcaggtttggtaccaacaacagtt 19422203  T
Q  522 gttgttggatatattt 537  Q
     |||||||||| ||||    
T  19422202 attgttggatagattt 19422187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 8739467 - 8739564
Alignment:
Q  302 tactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagtcact 400  Q
    ||||||| |||||||  |||||| ||||| |||  |||| ||||||| |||||||||||||| ||||||||||  |||||||||| ||| |||| ||||    
T  8739467 tactcaatcattgaagaattcaactaata-atatctttccttgagaacattagagagtttctttattttctctttctttccttttatccctgagccact 8739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 43179560 - 43179641
Alignment:
Q  134 taagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||  ||| |||| | |||| | ||||||||||||  |||| |||||||||||||| |||||| ||||||||||||    
T  43179560 taagcattaaagaaatcttaacttttttggatccttctagtcatatgaactagagtatccatgtctctatacttttctttgt 43179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 24908219 - 24908157
Alignment:
Q  225 tttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgttt 287  Q
    |||||| ||||||| |  || ||| |||||||||||||||||| ||||| |||||||||||||    
T  24908219 tttctactttgtaacgtggaaccttcctagagtagtataaatagggttcaccaccaagtgttt 24908157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 29833456 - 29833079
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  29833456 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaag 29833357  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  29833356 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 29833257  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattga 315  Q
    || ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |  | |||||| ||  |||| ||||||    
T  29833256 ttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcacattcaa-atcatcaagcattga 29833158  T
Q  316 atcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  29833157 atcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgag 29833079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 734959 - 734582
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  734959 aatatggaagactctagaatactagggaataatgtggaagtctttagaagactaaagaataatatagaagtctctagaatactagggaataacaaggaag 734860  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  734859 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt 734760  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagat-atattcaagatactcaaccattg 314  Q
    || ||||||||||||||||||||||| |||||| |||||| |||||||||||||| || ||||| ||||||| | | ||| |||||||| |||| |||||    
T  734759 ttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccacctagtgttttggtcatactcaagataatcaagcattg 734660  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| |||||||||||||| ||||||| |||||||||||  || ||||||||||||||||||||||||||||||||| ||||    
T  734659 aatgattcaagtaatata-acttttccttgagaatatt--agtgtttctctattttctctacctttccttttgtccctgag 734582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 2404202 - 2403838
Alignment:
Q  22 gaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctacta 121  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  2404202 gaagactctaggatactagagaataatgtggaaatctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctacta 2404103  T
Q  122 gacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatag 221  Q
    || ||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||    
T  2404102 gatactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctag 2404003  T
Q  222 atatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcatt 321  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||  ||||||| |  ||  |||||         ||| ||| ||||    
T  2404002 atatttctagtttgtaatggagagtcttcctagagtagtataaataaggttcaccacttagtgttttggcatcatcaag---------catagaaacatt 2403912  T
Q  322 caagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2403911 caaataatataatattttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgag 2403838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 8933913 - 8933552
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacact--actaaataa-- 136  Q
    |||||||| ||||| | |||| || ||||||||| ||||| ||||||| || ||||||| | |||||||||||||||| ||||||||  |||||||||      
T  8933913 agaataatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaa 8933814  T
Q  137 ----gcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttatagat 223  Q
        ||| |||| || |||| || ||||||||||||||||||  |||| |||||||||||||| | ||||| | |||||||||         || |||||    
T  8933813 taaagcactaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagat 8933714  T
Q  224 atttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattca 323  Q
    | |||||||||||||||  || ||| ||||||||||||||||||||| || |||| |||||||| |       |||||   |||| ||||||||||||||    
T  8933713 aattctagtttgtaatgtagaaccttcctagagtagtataaataaggctcaccactaagtgttttg-------caagaa--tcaagcattgaatcattca 8933623  T
Q  324 agtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  8933622 agtaatata-acttttctttgaaaatattagagtgtttctctattttctctaccttttcttttgtccctgag 8933552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 10909108 - 10909289
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || |||| ||||||||||  | |||||| | | |||| |||    
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-agaatcaagcat 10909206  T
Q  313 tgaatcattcaagtaatatatacttttc-tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10909207 tgaatcattcaagtaatata-acttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 10909289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 193 - 395
Target Start/End: Original strand, 29833852 - 29834043
Alignment:
Q  193 catatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagata 292  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| || | ||| ||||||| |       
T  29833852 catatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcactacctagtgttttg--- 29833948  T
Q  293 tattcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgt 392  Q
           |||  |||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  29833949 -------gatgatcaagcattgaatccttcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccct 29834040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 10911352 - 10911532
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||||||||||||||||  || ||| ||||||||||||||||||||| || |||| ||||||||||  | |||||| | | |||| |||    
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-agaatcaagcat 10911450  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  10911451 tgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgag 10911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 213 - 388
Target Start/End: Original strand, 13011698 - 13011871
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||| |||||| |||||  |||||| ||||||||||||||||||||| || |||| ||||||||||| | |||||| | | |||| |||    
T  13011698 tgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattcaa-agaatcaagcat 13011796  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgt 388  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13011797 tgaatcattcaaataatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgt 13011871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 2416774 - 2416660
Alignment:
Q  22 gaagactctagaatactagagaataatgtggaagtatct-agaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctact 120  Q
    ||||||||||| |||| |||||||||||||||||| ||| |||| |||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  2416774 gaagactctaggataccagagaataatgtggaagtctctcagaagactacagaataatatagaactctctagaatactagggaataataaggaagctact 2416675  T
Q  121 agacactactaaata 135  Q
    ||| |||||||||||    
T  2416674 agatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 210 - 395
Target Start/End: Complemental strand, 2410136 - 2409960
Alignment:
Q  210 ctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaac 309  Q
    |||||||| |||||||| ||| |||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||  |||||             
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatcatcaag--------- 2410046  T
Q  310 cattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| ||| ||||||| |||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  2410045 catagaaacattcaaataatataatattttctttgagaatattatagagtttctctattttctctacctttccttttgtccctgag 2409960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 419284 - 419213
Alignment:
Q  52 gaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactaga 123  Q
    ||||| ||||||||||||||||||||||| ||||||| || |||  ||   |||||||||||||||||||||    
T  419284 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 36464604 - 36464216
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  36464604 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaataataatatagaagtctctagaatactagggaataataaggaag 36464505  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36464504 ctactagacactactaaataagcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctccagacttttctttgt 36464405  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatac----------t 305  Q
    || |||||||||||||||| |||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| |||||||||          |    
T  36464404 ttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagt 36464305  T
Q  306 caaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  36464304 caagcattgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgag 36464216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 8414871 - 8414493
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  8414871 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaaa 8414772  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||    
T  8414771 ctactagacactactaaataagcactagggaagtcttgacttttctagat-cttctagttttatatactaaaatatccatatctctagacttttctttgt 8414673  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattg 314  Q
    || ||||| ||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| ||||| ||| |||| |||||    
T  8414672 ttctagatttttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagcatattcaagcattg 8414573  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  8414572 aatcattcaaataatata-acttttctttgagaatattagagtgtttttctattttctctacctttccttttgtccctgag 8414493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 3052003 - 3052379
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaata----ataag 111  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||    |||||    
T  3052003 aatatggaagactctagaatactagagaataatgtcgaagtctctataacactaaagaataatatagaagtctctagaatactagataataaataataag 3052102  T
Q  112 gaagctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttct 211  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3052103 gaagctactagacactactaaataagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctctagacttttct 3052202  T
Q  212 ttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaacc 310  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |||||| ||||| |||||||| |    
T  3052203 ttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgatatactcaagtatactcaagc 3052302  T
Q  311 attgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||||| ||||||| ||||||| || ||||||||||||||  | ||||||||| ||||||||||||| ||||||||||||    
T  3052303 attgaagcattcaaataatataaac-tttctttgagaata--atagagtttctttattttctctaccattccttttgtcc 3052379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 3932518 - 3932896
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |||||||||  |  |||||||| ||||||| ||||||| ||||||||||||||| |||| || |||||||||||| |||||||||||||    
T  3932518 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaag 3932617  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3932618 ctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt 3932717  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattg 314  Q
    || ||||||||||||||||||||||| |||||| |||||| |||||||||||||| || ||| | ||||||| |  ||| ||||| ||| |||| |||||    
T  3932718 ttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttg-gatactcaagcataatcaagcattg 3932816  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  3932817 aatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 3932896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 3934757 - 3935135
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |||||||||  |  |||||||| ||||||| ||||||| ||||||||||||||| |||| || |||||||||||| |||||||||||||    
T  3934757 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaag 3934856  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3934857 ctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt 3934956  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattg 314  Q
    || ||||||||||||||||||||||| |||||| |||||| |||||||||||||| || ||| | ||||||| |  ||| ||||| ||| |||| |||||    
T  3934957 ttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttg-gatactcaagcataatcaagcattg 3935055  T
Q  315 aatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  3935056 aatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 3935135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 8733850 - 8733498
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||     
T  8733850 agaataatatggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcac 8733751  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||   |||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  8733750 taggg---tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaag 8733654  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattgaatcattcaagtaatatatactttt 339  Q
    | |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| ||||| ||  |||| ||||||| ||||||| |||||||  |||||    
T  8733653 gagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagaatcatcaagcattgaagcattcaaataatataatctttt 8733554  T
Q  340 ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  8733553 ctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgag 8733498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 71 - 395
Target Start/End: Original strand, 19786621 - 19786963
Alignment:
Q  71 agaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcattagggaagtcttgatttttctagatccttc 170  Q
    |||||||| | ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  19786621 agaataatgtggaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttc 19786720  T
Q  171 tagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataagg 270  Q
    |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  19786721 taggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataagg 19786820  T
Q  271 ttccccaccaagtgtttag--atat-------attcaagatac---------tcaaccattgaatcattcaagtaatatatactttt-ctttgagaatat 351  Q
     || ||||| ||||||| |  ||||       |||||||||||         |||| |||||||| |||||||||||||| |||||| ||||||||||||    
T  19786821 ctcaccacctagtgttttggcatattcaagacattcaagatactcaagataatcaagcattgaatgattcaagtaatata-acttttcctttgagaatat 19786919  T
Q  352 tagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  19786920 tagagtgtttctctattttctctacctttccttttgtccctgag 19786963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 71 - 395
Target Start/End: Original strand, 19788927 - 19789269
Alignment:
Q  71 agaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcattagggaagtcttgatttttctagatccttc 170  Q
    |||||||| | ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  19788927 agaataatgtggaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttc 19789026  T
Q  171 tagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataagg 270  Q
    |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  19789027 taggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactagagtagtataaataagg 19789126  T
Q  271 ttccccaccaagtgtttag--atat-------attcaagatac---------tcaaccattgaatcattcaagtaatatatactttt-ctttgagaatat 351  Q
     || ||||| ||||||| |  ||||       |||||||||||         |||| |||||||| |||||||||||||| |||||| ||||||||||||    
T  19789127 ctcaccacctagtgttttggcatattcaagacattcaagatactcaagataatcaagcattgaatgattcaagtaatata-acttttcctttgagaatat 19789225  T
Q  352 tagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  19789226 tagagtgtttctctattttctctacctttccttttgtccctgag 19789269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 42678934 - 42678574
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacact--actaaataa-- 136  Q
    |||||||| ||||||| ||||||| ||||||||||||||| ||||||| || ||||||| | |||||||||||||||||||||||||  |||||||||      
T  42678934 agaataatatggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaa 42678835  T
Q  137 ----gcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttatagat 223  Q
        ||| |||| || |||| || ||||||||||||||||||  ||||  ||||||||||||| | ||||| | |||||||||         || |||||    
T  42678834 taaagcactaggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccatgtttctaggcctttctttgtaatcaatgtttctagat 42678735  T
Q  224 atttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattca 323  Q
    | |||||||||||||||  || ||| || |  ||||||||||||||| || ||||||||||||| ||       | |||   ||| ||||||||||||||    
T  42678734 aattctagtttgtaatgtagaaccttcccaaggtagtataaataaggctcaccaccaagtgttttga-------aggat---caagcattgaatcattca 42678645  T
Q  324 agtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  42678644 agtaatata-acttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgag 42678574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 8731359 - 8731179
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| |||||||||||| |||||||||  |||||| ||||||||||||||||||||| || |||| ||||||||||  | ||| || | | |||| |||    
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacatttaa-agaatcaagcat 8731261  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  8731260 tgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgag 8731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 243 - 390
Target Start/End: Original strand, 18395344 - 18395489
Alignment:
Q  243 gagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttctt 342  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||||| | ||| || | | |||| ||||||||||||||||||||||| |||||||||    
T  18395344 gagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattaaa-agagtcaagcattgaatcattcaagtaatata-acttttctt 18395441  T
Q  343 tgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  18395442 tgagaatattagagtgtttctctattttctctacctttccttttgtcc 18395489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 16497045 - 16496956
Alignment:
Q  305 tcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  16497045 tcaagcattgaatcatttaagtaatata-acttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgag 16496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 16535227 - 16535143
Alignment:
Q  305 tcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  16535227 tcaagcattgaatcatttaagtaatata-acttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtcc 16535143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 16630435 - 16630519
Alignment:
Q  305 tcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  16630435 tcaagcattgaatcatttaagtaatata-acttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtcc 16630519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 387
Target Start/End: Complemental strand, 19094092 - 19093855
Alignment:
Q  165 tccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttatagatatttctagtttgtaatggcgagc----ctacc 251  Q
    |||||||||  ||||  |||||||||||||| |||||||||||||||||||         || ||||||||||||||||||||||  |||     ||  |    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgtaatcgatatttttagatatttctagtttgtaatgtagagtacgtctttc 19093993  T
Q  252 tagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatactt-----ttctttgag 346  Q
    |||||||||||||||||||||| |||||||||||| ||  ||| ||||| || ||||  ||| || ||||||| ||||||| |  |     |||||||||    
T  19093992 tagagtagtataaataaggttcgccaccaagtgttcaggcatactcaag-tattcaaaaattcaaacattcaaataatataaatataaactttctttgag 19093894  T
Q  347 aatattagagagtttctctattttctctacctttccttttg 387  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  19093893 aatattagagagtt--tctattttctctacctctccttttg 19093855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 28610424 - 28610348
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttag 289  Q
    ||||| ||||||||||||||||||||||  ||||||  |||||||||||||||||||| || |||||||||||||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccaccaagtgtttag 28610348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 21769213 - 21769082
Alignment:
Q  251 ctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaata 350  Q
    |||||||||||||||||||| ||  ||||  |||||| |  |||||||||  | |||| ||||||| ||||||| |||||   ||||| |||||||||||    
T  21769213 ctagagtagtataaataaggctcatcaccctgtgtttggc-atattcaagc-attcaagcattgaaacattcaaataataacaacttt-ctttgagaata 21769117  T
Q  351 ttagagagtttctctattttctctacctttccttt 385  Q
    ||| |||||||||||||||||||||||||||||||    
T  21769116 ttaaagagtttctctattttctctacctttccttt 21769082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 16497189 - 16497078
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |||||||||  |  |||||||| |||| |  ||||||| | ||||||||||| | ||||| | |||||||||| | |||||||||||||    
T  16497189 aatatggaagtctctagaatgatcaagaataatatggatgcctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaag 16497090  T
Q  116 ctactagacact 127  Q
    ||||||||||||    
T  16497089 ctactagacact 16497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 16535371 - 16535260
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| || ||||||  |  |||||||| ||||||  ||||||| | ||||||||||| | ||||||| |||||||||| | |||||||| ||||    
T  16535371 aatatggaagtctatagaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaag 16535272  T
Q  116 ctactagacact 127  Q
    ||||||||||||    
T  16535271 ctactagacact 16535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 16630291 - 16630402
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| || ||||||  |  |||||||| ||||||  ||||||| | ||||||||||| | ||||||| |||||||||| | |||||||| ||||    
T  16630291 aatatggaagtctatagaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaag 16630390  T
Q  116 ctactagacact 127  Q
    ||||||||||||    
T  16630391 ctactagacact 16630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 42680808 - 42680852
Alignment:
Q  344 gagaatattagagagtttctctattttctctacctttccttttgt 388  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  42680808 gagaatattagagtgtttctctattttctctacctttcattttgt 42680852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 21268510 - 21268123
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  21268510 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaag 21268411  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21268410 ctactagacactactaaataaa-actagggaagtcttgacttttctagatccttctagttttatgtactaaagtatccatatctctagacttttctttgt 21268312  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttag---------atatattcaagatactc 306  Q
    || ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || | ||| |||||||||         | ||| |||||||| ||    
T  21268311 ttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcactacctagtgtttaggcataatccaaatactcaagataatc 21268212  T
Q  307 aaccattgaatcattcaagtaatatatactttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    || |||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  21268211 aagcattgaatgattcaagtaatata-acttttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgag 21268123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 36379848 - 36379468
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  36379848 aatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 36379749  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  36379748 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt 36379649  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccacc-aagtgtttagatatattcaagatactcaaccattg 314  Q
    ||  |||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||   |||||| |  ||| |||||||| |||| |||||    
T  36379648 ttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctgggtgttttggcatactcaagataatcaagcattg 36379549  T
Q  315 aatcattcaagtaatatatactttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36379548 aatgattcaagtaatata-acttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 36379468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 36377563 - 36377193
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  36377563 aatatggaagactctagaatactaaggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 36377464  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||    
T  36377463 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctgaacttttctttgt 36377364  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccacc-aagtgtttagatatattcaagatactcaaccattg 314  Q
    ||  ||||||||||| |||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||| |  ||| |||| ||| |||| |||||    
T  36377363 tttcagatatttctactttgtaatggagagccttcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaaaataatcaagcattg 36377264  T
Q  315 aatcattcaagtaatatatactttt-ctttgagaatattagagagtttctctattttctctacctttccttt 385  Q
    ||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  36377263 aatgattcaagtaatata-acttttcctttgagaatattagagtgtttctctattttctctacctttccttt 36377193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 41 - 395
Target Start/End: Original strand, 4876820 - 4877173
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| || ||||||||| || ||||||||||||||||||||| |||||||||||||||     
T  4876820 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcac 4876919  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||| | ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4876920 tagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 4877019  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttc 340  Q
    | |||||| ||||||||||||||||||||| || ||| | ||||||| || ||| |||||||| |||| |||||||| |||||||||||||| |||||||    
T  4877020 gagagccttcctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatgattcaagtaatata-acttttc 4877118  T
Q  341 tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4877119 cttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 4877173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 41 - 395
Target Start/End: Original strand, 4879148 - 4879501
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| || ||||||||| || ||||||||||||||||||||| |||||||||||||||     
T  4879148 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcac 4879247  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||| | ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4879248 tagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 4879347  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttc 340  Q
    | |||||| ||||||||||||||||||||| || ||| | ||||||| || ||| |||||||| |||| |||||||| |||||||||||||| |||||||    
T  4879348 gagagccttcctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatgattcaagtaatata-acttttc 4879446  T
Q  341 tttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4879447 cttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 4879501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 41 - 395
Target Start/End: Complemental strand, 24519510 - 24519156
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacactactaaataagcat 140  Q
    |||||||| ||||||| |||||||   | ||||||||||| |||| || ||||||||| || ||||||||||||||||| ||| |||||||||||||||     
T  24519510 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcac 24519411  T
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatg 240  Q
    |||||||||||| | ||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  24519410 tagggaagtcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatg 24519311  T
Q  241 gcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattgaatcattcaagtaatatatactttt 339  Q
    | |||||| ||||||||||||||||||||| || ||| | ||||||| |  ||| | ||| ||| |||| ||||||||||||||||||||||| ||||||    
T  24519310 gagagccttcctagagtagtataaataaggctcaccatctagtgttttggcatactgaagcataatcaagcattgaatcattcaagtaatata-actttt 24519212  T
Q  340 ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24519211 cttagagaatattagagtgtttctctattttctctacctttccttttgtccctgag 24519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 31486686 - 31487066
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||||| |||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  31486686 aatatggaagactctagaatactagggaataatgtggaagcctctagaagactagagaataatatagaagtctctagaatactagggaataataaggaag 31486785  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  31486786 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt 31486885  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccacc-aagtgtttagatatattcaagatactcaaccattg 314  Q
    ||  |||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||| |  ||| |||||||| |||| |||||    
T  31486886 ttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattg 31486985  T
Q  315 aatcattcaagtaatatatactttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  31486986 aatgattcaagtaatata-acttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 31487066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 31488970 - 31489345
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  31488970 aatatggaagactctagaatactagggaataatgtggaagtctctaaaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 31489069  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| ||||||||||||   |||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||    
T  31489070 ctactagacactactaaataagcactagggaagtcttagcttttctagatccttctaagcttatgtactagagtatccatatctctggacttttctttgt 31489169  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccacc-aagtgtttagatatattcaagatactcaaccattg 314  Q
    ||  |||||||||||||||||||||| |||||| |||| |||||||||||||||| || ||||| |||||||| |  ||| |||||||| |||| |||||    
T  31489170 ttccagatatttctagtttgtaatggagagccttcctaaagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattg 31489269  T
Q  315 aatcattcaagtaatatatactttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    ||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31489270 aatgattcaagtaatata-acttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtcc 31489345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 23859781 - 23860184
Alignment:
Q  17 atatggaagactctagaatactagagaataatgtggaagta----tctagaacactaaagaataatatagaagtctttagaatactaggtaataataagg 112  Q
    |||||||| ||||||||||||||  ||||||| ||||| ||    ||||||||||||||||||||||| | ||||| |||||||||| | ||||||||||    
T  23859781 atatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataagg 23859880  T
Q  113 aagctactagaca--ctactaaataag-----------cattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatct 199  Q
    ||||||||| |||  |||||||||||            || ||| ||| ||||   ||||||||||||||||||| ||||| |||||||||| ||| | |    
T  23859881 aagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtatgcatgttt 23859980  T
Q  200 ctagacttttctttgt---------ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttaga 290  Q
    |||| | |||||||||         || |||||| |||||||||||||||  |||||| ||||||||||||||||||||| || ||||||||||||||      
T  23859981 ctaggcctttctttgtaatcaatatttctagataattctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccaccaagtgtttacg 23860080  T
Q  291 tatattcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||||||||||||||||| ||||||| |||| || ||||| |||  |||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  23860081 tatattcaagatactcaagcattgaaacatttaaataata-atatctttctttgagaatattagagagtttctctattttctatgcttttccttttgtcc 23860179  T
Q  391 gtgag 395  Q
     ||||    
T  23860180 ctgag 23860184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 29801777 - 29802162
Alignment:
Q  16 aatatggaagactctagaatactagagaa-taatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaa 114  Q
    |||||||||| |||||||||| || | || |||| ||||||| |||||||||| |||||||||||  ||||| | ||||||||||   ||||||||||||    
T  29801777 aatatggaagtctctagaataataaaaaaataatatggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaa 29801876  T
Q  115 ----gctactagacactactaaa--taagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttt 208  Q
        ||||||||||||| |||||  |||||| | |  || |||| || |||||| |||||||||||  |||| |||| || |||||||||||||||||||    
T  29801877 tctagctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttt 29801975  T
Q  209 tctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaa 308  Q
    ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||| || |||||||||||||||  ||| |||||  | | ||    
T  29801976 tctttgtttgtagatatttctagtttgtaatggggagtcttcctagagtagtataaataaggctcaccaccaagtgtttaggcatagtcaag-cattgaa 29802074  T
Q  309 ccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagtca 398  Q
      ||| || ||||||| ||||| ||| | || |||||||||||||||||||||  |||||||||||||||||| |||||| |||| ||||    
T  29802075 gaattcaagcattcaaataata-ata-tcttttttgagaatattagagagttttactattttctctacctttcattttgttcgtgggtca 29802162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 42275739 - 42275559
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || |||| ||||||||||  | |||||| | | ||||  ||    
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-agaatcaagtat 42275641  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42275640 tgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 42275559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 42277965 - 42277785
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||||||||||||||||  ||| || ||||||||||||||||||||| || |||| ||||||||||  | |||||| | | |||| |||    
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-agaatcaagcat 42277867  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42277866 tgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 42277785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 8995208 - 8995078
Alignment:
Q  250 cctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaat 349  Q
    ||||||||||||||||||||| || ||||||||||||| |   ||      |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  8995208 cctagagtagtataaataaggctctccaccaagtgttttg---ta------atactcaagcattgaatcattcaagtaatata-acttttctttgagaat 8995119  T
Q  350 attagagagtttctctattttctctacctttccttttgtcc 390  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8995118 attagagagtttctctattttctctacctttccttttgtcc 8995078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 41 - 390
Target Start/End: Complemental strand, 34576969 - 34576612
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacact--actaaataa-- 136  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||   |||||  ||||||||||| ||||||  |||||||||      
T  34576969 agaataatgtggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaa 34576870  T
Q  137 ---------gcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------tta 218  Q
             ||| ||| ||| |||| | |||||||||||||||||||  |||| |||||||||| ||| |||||||||||||||||||         ||     
T  34576869 taaaattacgcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttc 34576770  T
Q  219 tagatatttctagtttgtaatggcgagcctaccta-gagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaat 317  Q
    ||||||||||||||||||||||  |||||| |||| || |||||||||||||| || ||| |||||||||||  ||  | ||||         ||| ||     
T  34576769 tagatatttctagtttgtaatgtagagccttcctaagattagtataaataaggctcaccatcaagtgtttaggcat--tgaaga---------attcaag 34576681  T
Q  318 cattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    ||||||| |||||| |    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34576680 cattcaaataatatct----ttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 5164252 - 5164154
Alignment:
Q  296 tcaagatactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5164252 tcaagataatcaagcattgaagcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 5164154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 15730012 - 15730091
Alignment:
Q  310 cattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15730012 cattgaatcattcaagtaatata-acttttatttgagaatattagagagtttctctattttctctacctttccttttgtcc 15730091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 39816151 - 39816092
Alignment:
Q  336 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 39816092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 34576960 - 34576903
Alignment:
Q  20 tggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataa 77  Q
    |||||| |||||||| |||| |||||||| ||||||| |||| || ||||||||||||    
T  34576960 tggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataa 34576903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 15729886 - 15729981
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataagg 112  Q
    |||||||| | |||||||| | || |||||||||||||||| ||||| |||  |||||||| ||  ||||||| ||||||||||   ||||||||||    
T  15729886 aatatggatgtctctagaacaataaagaataatgtggaagtctctag-acataaaagaatattaaggaagtctctagaatactaaagaataataagg 15729981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 23164621 - 23164257
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  23164621 aatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 23164522  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    ||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  23164521 ctactagacactactaaataaacactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt 23164422  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattga 315  Q
    || ||||||||||||||| ||||||| |||||| |||||||||||||||||||||  | ||||| ||||||| |          |||    || ||||||    
T  23164421 ttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggcccaccacctagtgttttg----------gat----aagcattga 23164336  T
Q  316 atcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  23164335 atcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgag 23164257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 11850288 - 11849920
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||| ||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||| ||||||||| |||    
T  11850288 aatatggaagactcttgaatactatggaataatgtggaagtctctagaagactaaagaataatatagaagtctctaaaatactagggaataataagaaag 11850189  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  11850188 ctactagacactactaaataagcactagggaagtcttaaattttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctttgt 11850089  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattga 315  Q
    || ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |          |||  |||| ||||||    
T  11850088 ttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------gatcatcaagcattga 11849999  T
Q  316 atcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  11849998 atcattcaaataatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 11849920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 11852546 - 11852178
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||   ||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  11852546 aatatggaagactctagaatactatgaaataatgaggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 11852447  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||| | | ||||||||  ||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  11852446 ctactagacactactaaataagcactagggaagtcataacttttctaggaccttctaggcttatgtactagagtatccatatctctagacttttatttgt 11852347  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattga 315  Q
    || ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |          |||  |||| ||||||    
T  11852346 ttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------gatcgtcaagcattga 11852257  T
Q  316 atcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  11852256 atcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 11852178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 22600715 - 22601084
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||| | ||||||||| |||    
T  22600715 aatatggaagactctagaatattagggaataatgtggaagtctctagaagactaaataataatatagaagtctctagaatactatggaataataagaaag 22600814  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    ||||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  22600815 ctacttgacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt 22600914  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattga 315  Q
    || ||||||||||||||| ||||||| ||| ||  ||| |||||||||||||||| || ||||| ||||||| |          |||  |||| ||||||    
T  22600915 ttctagatatttctagttggtaatggagagtcttgctaaagtagtataaataaggctcaccacctagtgttttg----------gatcatcaagcattga 22601004  T
Q  316 atcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    | ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  22601005 agcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgag 22601084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 37207675 - 37207946
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  37207675 aatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctgtagaatactagggaataataaggaag 37207774  T
Q  116 ctactagacactactaaataagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 215  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  37207775 ctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 37207874  T
Q  216 ttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgttt 287  Q
    || ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| || ||||| |||||||    
T  37207875 ttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttt 37207946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 146 - 401
Target Start/End: Original strand, 37215396 - 37215641
Alignment:
Q  146 aagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgag 245  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||  |||    
T  37215396 aagtcttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagag 37215495  T
Q  246 cctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttctttga 345  Q
    ||| ||||||||||||||||||||| || ||||  ||||||| |           ||  |||| ||||||| ||||||| |||||||  |||||||||||    
T  37215496 ccttcctagagtagtataaataaggctcaccacatagtgttttg----------catcatcaagcattgaagcattcaaataatataatcttttctttga 37215585  T
Q  346 gaatattagagagtttctctattttctctacctttccttttgtccgtgagtcactt 401  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  37215586 gaatattagagagtttctctattttctctaccttcccttttgtccctgagccactt 37215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 41 - 401
Target Start/End: Complemental strand, 1779581 - 1779219
Alignment:
Q  41 agaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacact--actaaat---- 134  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||  |||||||        
T  1779581 agaataatatggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaa 1779482  T
Q  135 --aagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt---------tgtttatagat 223  Q
      ||||| |||  || |||| || ||||||||||||||||||  |||| |||||||||||||| | ||||| | ||||||         ||||| |||||    
T  1779481 taaagcactagaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagat 1779382  T
Q  224 atttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattca 323  Q
    | |||||||||||||||  |||||| |||||||| |||||||||||| || ||| ||||||||| |  | | |||||          |||||||||||||    
T  1779381 aattctagtttgtaatgtagagccttcctagagtggtataaataaggctcaccaacaagtgttttgtaaaaatcaag---------tattgaatcattca 1779291  T
Q  324 agtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagtcactt 401  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||     ||||||||||||| |||| |||||    
T  1779290 agtaatata-acttttctttgagaatattagagtgttcctctattttct-----tttccttttgtccctgagccactt 1779219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 390
Target Start/End: Original strand, 21743622 - 21743789
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccat 312  Q
    ||||| ||||||||| ||||||||| ||  |||||| |||||||||||||||||||| ||| |||||||||| ||||  ||| |||||         |||    
T  21743622 tgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaataagattcaccaccaagtggttaggcatactcaag---------cat 21743712  T
Q  313 tgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtcc 390  Q
    ||||  |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21743713 tgaagaattcaaataatataaacttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtcc 21743789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 1779840 - 1779645
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaag 115  Q
    |||||||||| |  |||||||||| |||| ||||||||||| || | |||||||||||||||||| ||||||| ||||||||||   ||||||   ||||    
T  1779840 aatatggaagtccttagaatactaaagaaaaatgtggaagtctccataacactaaagaataatatggaagtctctagaatactaaagaataatgtcgaag 1779741  T
Q  116 ctactagaca--ctact-----aaat-aagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctag 203  Q
    ||||||||||  |||||     |||| ||||  ||||||| |||| || ||||||||||||||||||  |||| |||||| ||||| |||||||||    
T  1779740 ctactagacattctactggataaaataaagcgctagggaaatcttaatgtttctagatccttctagtcatatgaactagaatatccctatctctag 1779645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 37207998 - 37208067
Alignment:
Q  326 taatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  37207998 taatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgag 37208067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 15469197 - 15469255
Alignment:
Q  337 tttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  15469197 tttctttgagaatattagagagtttctctattttttttacctttccttttgtccctgag 15469255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 1779218 - 1779180
Alignment:
Q  250 cctagagtagtataaataaggttccccaccaagtgttta 288  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  1779218 cctagagtagtataaataaggctcaccaccaagtgttta 1779180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 176 - 395
Target Start/End: Original strand, 1579 - 1798
Alignment:
Q  176 ttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccc 275  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |    
T  1579 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcac 1678  T
Q  276 caccaagtgtttagatatattcaag-atactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctct 374  Q
    |||| ||||||| |  ||| ||||| ||  |||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  1679 cacctagtgttttggcatactcaagcatcatcaagcattgaatcattcaagtaatata-acttttctttgaggatattagagtgtttctctattttctct 1777  T
Q  375 acctttccttttgtccgtgag 395  Q
    |||||||||||||||| ||||    
T  1778 acctttccttttgtccctgag 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 18966494 - 18966219
Alignment:
Q  27 ctctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactagacac 126  Q
    ||||||||||||| |||||||||||||||| |||||||||| |||||||||||  ||||||| ||||||||||| ||||||||||| |||||||||| ||    
T  18966494 ctctagaatactaaagaataatgtggaagtctctagaacaccaaagaataatagggaagtctctagaatactagataataataaggtagctactagatac 18966395  T
Q  127 t--actaaat-----------aagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttcttt 213  Q
    |  |||||||           ||||| |||| || |||| || ||||||||||||||||||  || |||||||||||||||||||||| ||||||||||     
T  18966394 tctactaaatgaaataaaattaagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttg 18966295  T
Q  214 gtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttag 289  Q
    |||| |||||||||||||| ||| |||| | | || ||||||||||||||||||||| || |||||||||||||||    
T  18966294 gtttctagatatttctagtgtgtcatggagtgtcttcctagagtagtataaataaggctcaccaccaagtgtttag 18966219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 4530835 - 4531017
Alignment:
Q  213 tgtttatagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaacca 311  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| | ||| ||  |||| ||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagca 4530934  T
Q  312 ttgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4530935 ttgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 4531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 219 - 395
Target Start/End: Original strand, 4533138 - 4533314
Alignment:
Q  219 tagatatttctagtttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaag-atactcaaccattgaat 317  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||||| || ||||| ||||||| |  ||| | ||| ||  |||| ||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagcattgaat 4533237  T
Q  318 cattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4533238 cattcaagtaatata-acttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 4533314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 39578247 - 39578315
Alignment:
Q  17 atatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaag 85  Q
    ||||||||||||||||||||||| ||||||||||| |||| |  |||||||||||||||||||| ||||    
T  39578247 atatggaagactctagaatactaaagaataatgtgaaagtttacagaacactaaagaataatatggaag 39578315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 8535521 - 8535578
Alignment:
Q  155 tttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt 212  Q
    ||||| ||||||||||||||  |||  |||| ||||||||||||||||||||||||||    
T  8535521 tttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 1701107 - 1701179
Alignment:
Q  141 tagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttcttt 213  Q
    ||||||| |||| | |||||||||||||||||||  |||| | |||| ||||||||| ||||| |||||||||    
T  1701107 tagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 134 - 395
Target Start/End: Original strand, 31574 - 31826
Alignment:
Q  134 taagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatat--ctctagacttttctttgtttatagatatttctag 231  Q
    |||||| ||||||| |||| || ||||||||||||||||||  |||||||||||  ||||||||  ||||||||||||||| |||| |||||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt-gtttttagatatttctag 31672  T
Q  232 tttgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatat 331  Q
    |||||||||| |||||| ||||||||||||||||||||| || ||||||||||| |||           |||||||| ||||| | ||||||| |||||     
T  31673 tttgtaatggagagccttcctagagtagtataaataaggctcaccaccaagtgtgtag---------gcatactcaagcattgtagcattcaaataata- 31762  T
Q  332 atacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    | |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31763 acaaatttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgag 31826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 134 - 395
Target Start/End: Original strand, 29261 - 29511
Alignment:
Q  134 taagcattagggaagtcttgatttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttatagatatttctagtt 233  Q
    |||||| ||||||| |||| || ||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||| ||||||||| |||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttc-ttgtttctagatatttttagtt 29359  T
Q  234 tgtaatggcgagcctacctagagtagtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatat 333  Q
    |||||||| ||| || ||||||||||||||||||||| || ||||||||||  |||           |||||||| ||||||| |||| || ||||| |     
T  29360 tgtaatggagagtcttcctagagtagtataaataaggctcaccaccaagtgcgtag---------gcatactcaagcattgaagcatttaaataata-ac 29449  T
Q  334 acttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29450 aactttctttgagaacattagagagtttctctattttctctacctttccttttgtccctgag 29511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 29137 - 29209
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtct 88  Q
    |||||||||| ||||| || |||| |||| ||||||||||| ||||||||| | ||||||||||| |||||||    
T  29137 aatatggaagtctctaaaacactaaagaacaatgtggaagtctctagaacattcaagaataatatggaagtct 29209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31455 - 31527
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtct 88  Q
    |||||||||  ||||| || |||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||    
T  31455 aatatggaactctctaaaacactaaagaacaatgtggaagtctctagaacactcaagaataatatggaagtct 31527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 1 - 137
Alignment:
Q  258 agtataaataaggttccccaccaagtgtttagatatattcaagatactcaaccattgaatcattcaagtaatatatacttttc-tttgagaatattagag 356  Q
    ||||||||||||| || |||| ||||||||||  | |||||| | | |||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||    
T  1 agtataaataaggctcaccactaagtgtttaggcacattcaa-agaatcaagcattgaatcattcaagtaatata-acttttcgtttgagaatattaaag 98  T
Q  357 agtttctctattttctctacctttccttttgtccgtgag 395  Q
     ||||||||||||||||||||||||||||||||| ||||    
T  99 tgtttctctattttctctacctttccttttgtccctgag 137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 88439 - 88528
Alignment:
Q  305 tcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  88439 tcaaacattgaatcattcaagtaatata-acttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgag 88528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 73080 - 73152
Alignment:
Q  16 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtct 88  Q
    |||||||||| |||||||||  |  |||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  73080 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtct 73152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 3804 - 3710
Alignment:
Q  301 atactcaaccattgaatca-ttcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    ||||||||||||||||  | ||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  3804 atactcaaccattgaagaaattcaaataatataaacttt-ctttgagaatattagagagttactctattttctctacctttccttttgtccctgag 3710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 21199146 - 21199376
Alignment:
Q  70 aagaataatatagaagtctttagaatactaggtaataataaggaagctactagaca--ctactaaat------aagcattagggaagtcttgatttttct 161  Q
    ||||||||||| ||||||| |||||||||| | ||||||||||||||||||| |||  |||||||||      ||||| |||  || |||| || |||||    
T  21199146 aagaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttct 21199245  T
Q  162 agatccttctagttttatgtactagagtatccata--tctctagacttttctt---------tgtttatagatatttctagtttgtaatggcgagcctac 250  Q
    |||||||||||||  |||| ||| |||||||||||  ||||||| | |||| |         ||||| ||||||||||||||||||||||   ||||| |    
T  21199246 agatccttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttc 21199345  T
Q  251 ctagagtagtataaataaggttccccaccaa 281  Q
    || ||||| |||||||||||||| |||||||    
T  21199346 ctggagtactataaataaggttcaccaccaa 21199376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 20642264 - 20642358
Alignment:
Q  300 gatactcaaccattgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgag 395  Q
    |||| |||| ||||||| ||||||| ||| | |||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  20642264 gatagtcaagcattgaagcattcaaataaaa-atatatttctttgagaatattagagaatttctctattttctctacctttcattttgtccctgag 20642358  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 11287 - 11358
Alignment:
Q  52 gaagtatctagaacactaaagaataatatagaagtctttagaatactaggtaataataaggaagctactaga 123  Q
    ||||| ||||||||||||||||||||||| ||||||| || |||  ||   |||||||||||||||||||||    
T  11287 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 11358  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 64082 - 64132
Alignment:
Q  337 tttctttgagaatattagagagtttctctattttctctacctttccttttgtc 389  Q
    |||||||||||||||||| |  |||||||||||||| |||||||| |||||||    
T  64082 tttctttgagaatattaggg--tttctctattttctttacctttcattttgtc 64132  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 71414 - 71464
Alignment:
Q  337 tttctttgagaatattagagagtttctctattttctctacctttccttttgtc 389  Q
    |||||||||||||||||| |  |||||||||||||| |||||||| |||||||    
T  71414 tttctttgagaatattaggg--tttctctattttctttacctttcattttgtc 71464  T

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