View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15524_low_5 (Length: 455)
Name: NF15524_low_5
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15524_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 46790600 - 46790171
Alignment:
| Q |
16 |
atatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacaca |
115 |
Q |
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| T |
46790600 |
atatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacaca |
46790501 |
T |
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| Q |
116 |
aaaccaatgacaagagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaa |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46790500 |
aaaccaatgacgagagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaa |
46790401 |
T |
|
| Q |
216 |
gagcatattcaagtgaagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttcatt |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
46790400 |
gagcatattcaagtgcagcaggattagagtttgataataccacagccactggtatagtacaatacagttggagtcatacaccactttcaactccttcatt |
46790301 |
T |
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| Q |
316 |
acctcatcttccaaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttacctaagaaatacccccgtgaagtcccaacaaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46790300 |
acctcatcttccaaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttacctaagaaatacccccatgaagtcccaacaaaa |
46790201 |
T |
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| Q |
416 |
atcaccactcatgtgataaccacaggttct |
445 |
Q |
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| T |
46790200 |
atcaccactcatgtgataaccacagtttct |
46790171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 46783158 - 46782788
Alignment:
| Q |
16 |
atatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46783158 |
atatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacaca |
46783059 |
T |
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| Q |
116 |
aaaccaatgacaagagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaa |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46783058 |
aaaccaatgacgagagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaa |
46782959 |
T |
|
| Q |
216 |
gagcatattcaagtg---aagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttc |
312 |
Q |
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|||||||||||| || | ||| || ||||||||||||| || ||| |||||| |||||| |||||||| | || | |||| ||| |||||||| |||| |
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| T |
46782958 |
gagcatattcaactgataacgcaagagtagagtttgataacaccacaaccactgctatagtgcaatacagagagagttatactccaatttcaacttcttc |
46782859 |
T |
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| Q |
313 |
attacctcatcttccaaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttac |
383 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
46782858 |
attaccttttcttcccaactataatgacacacaagcagcttttaacttcatcagaagcattagcggcttac |
46782788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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