View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15524_low_6 (Length: 390)
Name: NF15524_low_6
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15524_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42310747 - 42310400
Alignment:
| Q |
1 |
aataatcaattgcaaggtttgaatgtttgaattattttgtttaagtaaagtcttagcagttaaaagtaacaggactaggactcaaaatagaagatgtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310747 |
aataatcaattgcaaggtttgaatgtttgaattattttgtataagtaaagtcttagcagttaaaagtaacaggactaggactcaaaatagaagatgtctt |
42310648 |
T |
|
| Q |
101 |
cttgaagtagttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcataatgttactttactatttaaagga |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42310647 |
cttgaaatagttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcagaatgttactttactatttaaagga |
42310548 |
T |
|
| Q |
201 |
atttttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaaattagctcattatgggcttatggcaagggctgaaaggcatgt |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310547 |
atttttcaagtttggtgccgcttttttacattgtcatggagctgattaagttgcagaaattagctcattatgggcttatggcaagggctgaaaggcatgt |
42310448 |
T |
|
| Q |
301 |
tgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaa |
348 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42310447 |
tctaggagtggtgaagttttgcctcaaatatcatttatggattggtaa |
42310400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 47248615 - 47248985
Alignment:
| Q |
4 |
aatcaattgcaaggtttgaatgtttgaattattttgtttaagtaaagtcttagcagttaaaagtaacaggactaggactcaaaatagaagatgtcttctt |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47248615 |
aatcaattgcaatgtttgaatgtttgaattattttgtaaaattaaagtcttagcagttaaaagttacaggactaggactcaaaatagaagatgtcttctt |
47248714 |
T |
|
| Q |
104 |
gaagtagttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcataatgttactttactatttaaaggaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
47248715 |
gaagtagttttggattgaaggcaaaagatcacaacttttacctgtaaaattatgcagcaaaggagttggtcagaatgttgctttactatttaaaggaatt |
47248814 |
T |
|
| Q |
204 |
tttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaaattagctcattatgggcttatggcaagggctgaaaggcatgttgt |
303 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47248815 |
tttcaagtttgctgccgcttttttaaattgtcatggagctgattcagttgtagaaattagctcattatgggcttatggcaagggctgaaaggcatgttct |
47248914 |
T |
|
| Q |
304 |
aggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttgaattg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47248915 |
aggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttgaattg |
47248985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 99 - 369
Target Start/End: Complemental strand, 10010232 - 10009962
Alignment:
| Q |
99 |
ttcttgaagtagttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcataatgttactttactatttaaag |
198 |
Q |
| |
|
|||||| |||| ||||||| ||||| |||||||||||| || || ||||||||| ||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
10010232 |
ttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaag |
10010133 |
T |
|
| Q |
199 |
gaatttttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaaattagctcattatgggcttatggcaagggctgaaaggcat |
298 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
10010132 |
gactttttaaagttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaaattagctctgtatgggcttatggcaagggttgaaaggcat |
10010033 |
T |
|
| Q |
299 |
gttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
369 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10010032 |
gttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatggtttgttaaggctatgttg |
10009962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 12459933 - 12459841
Alignment:
| Q |
264 |
ctcattatgggcttatggcaagggctgaaaggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgt |
356 |
Q |
| |
|
||||||| | |||||| ||||| | ||||||| |||| | |||| |||||||||||| ||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
12459933 |
ctcattaggagcttatagcaagtgatgaaaggtgtgttcttggagcagtgaagctttgtctcaaatatcattgatgtattggaaatggtttgt |
12459841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 12390559 - 12390515
Alignment:
| Q |
325 |
caaatatcatttatggattggtaatggtttgttaaggctatgttg |
369 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
12390559 |
caaatatcattgatggattggaaatggtttgttaaggctatgttg |
12390515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 40141197 - 40141272
Alignment:
| Q |
293 |
aggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
369 |
Q |
| |
|
|||| |||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
40141197 |
aggcgtgttttaggagtagtgtaggtttgca-caaatatcattgatggattggaaatggtttgtttaggctatgttg |
40141272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 16044344 - 16044409
Alignment:
| Q |
303 |
taggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
369 |
Q |
| |
|
||||||||||| || ||||| ||||||||| | ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
16044344 |
taggagtagtgtaggtttgca-caaatatcactgatggattggaaatggtttgttgaggctatgttg |
16044409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University