View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15524_low_8 (Length: 363)

Name: NF15524_low_8
Description: NF15524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15524_low_8
NF15524_low_8
[»] chr3 (4 HSPs)
chr3 (80-285)||(20605945-20606150)
chr3 (142-354)||(20593126-20593351)
chr3 (80-144)||(20590916-20590980)
chr3 (46-75)||(20590204-20590233)
[»] chr6 (2 HSPs)
chr6 (80-363)||(5155248-5155530)
chr6 (108-272)||(17537657-17537821)
[»] chr2 (3 HSPs)
chr2 (80-200)||(24509713-24509834)
chr2 (108-200)||(32152777-32152870)
chr2 (81-179)||(23739782-23739880)
[»] chr7 (2 HSPs)
chr7 (108-200)||(24176405-24176498)
chr7 (168-201)||(730150-730183)
[»] chr4 (4 HSPs)
chr4 (168-201)||(31229948-31229981)
chr4 (168-201)||(31234757-31234790)
chr4 (168-201)||(31234881-31234914)
chr4 (296-330)||(31234615-31234649)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 20605945 - 20606150
Alignment:
Q  80 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 179  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  20605945 tacttagcgcgcaagttatcttagtgcatttgtaatttcacttacatttacatttcatttgtattgcatgtagttagttacagatctcagcttctatata 20606044  T
Q  180 agctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtc 279  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  20606045 agctactcttgtaaccgttttcatcaattaatcaatacattctttctcttctttttctagagcttcaagctttatccatggtgatttccatggcggtttc 20606144  T
Q  280 aatctt 285  Q
    ||||||    
T  20606145 aatctt 20606150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 142 - 354
Target Start/End: Original strand, 20593126 - 20593351
Alignment:
Q  142 attgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagag 241  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  20593126 attgcatgtagttagttagagatcagagcttctatataagctactcttgtaactgttttcatcaattaatcaatacattctctctcttctttttctagag 20593225  T
Q  242 cttcaagctttatccatggtgatttccatggtggtgtcaatcttagatggttca-------------cttgctctgcttccgcacaatgaagatagaacg 328  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  |             |||||||||||||||||||||||||||||||||    
T  20593226 cttcaagctttatccatggtgatttccatggtgatgtcaatcttagatggtataagagcaagtgaatcttgctctgcttccgcacaatgaagatagaacg 20593325  T
Q  329 ttcttttgttcgtcttcctcttctat 354  Q
    || |||||||||||||||||||||||    
T  20593326 ttgttttgttcgtcttcctcttctat 20593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 20590916 - 20590980
Alignment:
Q  80 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtatt 144  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20590916 tacttagcgcgcaagttatcttagtgcctttgtaatttcacttacatttacatttcatttgtatt 20590980  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 20590233 - 20590204
Alignment:
Q  46 tttaagcaatattggttttctacttctgat 75  Q
    ||||||||||||||||||||||||||||||    
T  20590233 tttaagcaatattggttttctacttctgat 20590204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 80 - 363
Target Start/End: Complemental strand, 5155530 - 5155248
Alignment:
Q  80 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 179  Q
    ||||||||| |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  5155530 tacttagcgtgcaagttatcttggtgcatttgtaatttcactttcatatacatttcatttgtattgcatgtagttagttagaggacttagcttctatata 5155431  T
Q  180 agctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtc 279  Q
    ||||||||||||||||||||||||||||| || ||||||             ||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  5155430 agctactcttgtaaccgttttcatcaatt-atcaataca-------------ttttctagagcttcaagctttatccatggtggtttccatggcggtttc 5155345  T
Q  280 aatcttagatggt-tca------------cttgctctgcttccgcacaatgaagatagaacgttcttttgttcgtcttcctcttctattcctcttct 363  Q
    ||||||||||||| |||            |||||||||||||||||||||||||||| || ||| |||||||| |||||| ||||||||| ||||||    
T  5155344 aatcttagatggtatcagagcaagcgcatcttgctctgcttccgcacaatgaagataaaatgttgttttgttcatcttccccttctattcttcttct 5155248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 272
Target Start/End: Complemental strand, 17537821 - 17537657
Alignment:
Q  108 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaat 207  Q
    |||||||||||  || ||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||    
T  17537821 tttgtaatttcagtttcatttacatttcatttgtagtgcatctagttagttagagatcttagcttatatataagatactcttgtaaccgttttccacaat 17537722  T
Q  208 taattaataca-ttctctctcttctttttctagagcttcaagctttatccatggtgatttccatgg 272  Q
    |||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  17537721 taatcaatacatttctctctcctc-ttttctagagcttcaagctttatccatggtgatttccatgg 17537657  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 24509713 - 24509834
Alignment:
Q  80 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 179  Q
    |||||||||||||||||   |||| || ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  24509713 tacttagcgcgcaagtttcattagagcttttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 24509812  T
Q  180 -agctactcttgtaaccgtttt 200  Q
     ||||| || ||||||| ||||    
T  24509813 tagctattcctgtaaccatttt 24509834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 32152870 - 32152777
Alignment:
Q  108 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 200  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| |  ||||||||||||    
T  32152870 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattactgtaaccgtttt 32152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 23739782 - 23739880
Alignment:
Q  81 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 179  Q
    ||||||||||||||||   || | || ||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  23739782 acttagcgcgcaagtttcattcgagcttttgtaatttcactttgatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 23739880  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 24176498 - 24176405
Alignment:
Q  108 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 200  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| || ||||||||||||    
T  24176498 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattcctgtaaccgtttt 24176405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 730183 - 730150
Alignment:
Q  168 agcttctatataagctactcttgtaaccgttttc 201  Q
    |||||||||||||||||||| |||||||||||||    
T  730183 agcttctatataagctactcctgtaaccgttttc 730150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 31229981 - 31229948
Alignment:
Q  168 agcttctatataagctactcttgtaaccgttttc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  31229981 agcttctatataagctactcttgtaaccgttttc 31229948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 31234790 - 31234757
Alignment:
Q  168 agcttctatataagctactcttgtaaccgttttc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  31234790 agcttctatataagctactcttgtaaccgttttc 31234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 31234914 - 31234881
Alignment:
Q  168 agcttctatataagctactcttgtaaccgttttc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  31234914 agcttctatataagctactcttgtaaccgttttc 31234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 31234649 - 31234615
Alignment:
Q  296 cttgctctgcttccgcacaatgaagatagaacgtt 330  Q
    ||||||||||||||||||||||||||| |||||||    
T  31234649 cttgctctgcttccgcacaatgaagattgaacgtt 31234615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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