View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15525_high_4 (Length: 428)

Name: NF15525_high_4
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15525_high_4
NF15525_high_4
[»] chr1 (2 HSPs)
chr1 (18-424)||(46826586-46826991)
chr1 (18-405)||(46819680-46820066)
[»] chr8 (1 HSPs)
chr8 (370-411)||(9880773-9880814)
[»] chr3 (1 HSPs)
chr3 (369-400)||(24509589-24509620)
[»] chr7 (2 HSPs)
chr7 (369-411)||(31205999-31206041)
chr7 (370-411)||(5216506-5216547)
[»] chr5 (2 HSPs)
chr5 (370-411)||(4904923-4904964)
chr5 (370-411)||(7442426-7442467)
[»] chr4 (1 HSPs)
chr4 (370-411)||(40548519-40548560)
[»] chr2 (2 HSPs)
chr2 (370-411)||(13285668-13285709)
chr2 (370-411)||(18061413-18061454)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 46826991 - 46826586
Alignment:
Q  18 gaaaggaaagatcggttgaggtggccctcctagaaaaatgctttccatcaacaatgcgaggaaacaagagaatgaacttattatcttataaaaggaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46826991 gaaaggaaagatcggttgaggtggccctcctagaaaaatgctttccatcaacaatgcgaggaaacaagagaatgaacttattatcttataaaaggaccaa 46826892  T
Q  118 agtgcccttgcttttannnnnnnncttcacgtagaaagtgtttttctttactccaattattacttgcttctcacacctcattaaatattttgtcaaataa 217  Q
    ||||||||||||||||        ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46826891 agtgcccttgcttttattttttttcttcacgtacaa-gtgtttttctttactccaattattacttgcttctcacacctcattaaatattttgtcaaataa 46826793  T
Q  218 cttagtggtgggtgtaattcacacattttaaatgcggagaagtttgaagtttggagttcaatctccaacccatgtctaatattatctttttagctatcaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46826792 cttagtggtgggtgtaattcacacattttaaatgcggagaagtttgaagtctggagttcaatctccaacccatgtctaatattatctttttagctatcaa 46826693  T
Q  318 ctaagttgtacttacatgattagtactctcaccacatttatcattgtaggagtatttatgtcatttactaaatatacatctttattttctttcaatttct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46826692 ctaagttgtacttacatgattagtactctcaccacatttatcattgtaggggtatttatgtcatttattaaatatacatctttattttctttcaatttct 46826593  T
Q  418 tctcact 424  Q
    | |||||    
T  46826592 tttcact 46826586  T

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Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 46820066 - 46819680
Alignment:
Q  18 gaaaggaaagatcggttgaggtggccctcctagaaaaatgctttccatcaacaatgcgaggaaacaagagaatgaacttattatcttataaaaggaccaa 117  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  46820066 gaaaggaaagattggttgaggtggccctcctagcaaaatgctttccatcaacaatgcaaagaaacaagagaatgaacttgttatcttataaaaggaccaa 46819967  T
Q  118 agtgcccttgc------ttttannnnnnnncttcacgtagaaagtgtttttctttactccaattattacttgcttctcacacctcattaaatattttgtc 211  Q
    |||||||||||      ||||         ||||| ||| | | |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  46819966 agtgcccttgcttttttttttttttttcttcttcatgtacaca-tgttttcctttactccaattattacttgtttctcacagctcattaaatattttgtc 46819868  T
Q  212 aaataacttagtggtgggtgtaattcacacattttaaatgcggagaagtttgaagtttggagttcaatctccaacccatgtctaatattatctttttagc 311  Q
    |||||   |||| |||  ||||||||||||||| |||||  || ||||||| |||||||||||| || || |||||||| | ||||||| | ||||   |    
T  46819867 aaatagactagtagtgattgtaattcacacattgtaaatatggtgaagttttaagtttggagtttaaacttcaacccatatataatattgtatttt---c 46819771  T
Q  312 tatcaactaagttgtacttacatgattagtactctcaccacatttatcattgtaggagtatttatgtcatttactaaatatacatctttatttt 405  Q
     || || |||||||||||||||||| || |||||  ||||||||| |||||||||| ||||||||| | |||||| |||||  |||||||||||    
T  46819770 aattaaataagttgtacttacatgactattactcgtaccacatttgtcattgtagg-gtatttatgacctttacttaatat--atctttatttt 46819680  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 9880773 - 9880814
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  9880773 tatttttgtcatttactagatatacatctttattttctttca 9880814  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 24509620 - 24509589
Alignment:
Q  369 gtatttatgtcatttactaaatatacatcttt 400  Q
    ||||||||||||||||||||||||||||||||    
T  24509620 gtatttatgtcatttactaaatatacatcttt 24509589  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 31206041 - 31205999
Alignment:
Q  369 gtatttatgtcatttactaaatatacatctttattttctttca 411  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||    
T  31206041 gtatttatgtcatttattaaatatacatctttctttcctttca 31205999  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 5216547 - 5216506
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  5216547 tatttatgtcatttactaaatataaatctttctttcctttca 5216506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 4904964 - 4904923
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  4904964 tatttatgtcatttactaaatataaatctttctttcctttca 4904923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 7442426 - 7442467
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  7442426 tatttatgtcatttactaaatataaatctttctttcctttca 7442467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 40548560 - 40548519
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  40548560 tatttatgtcatttattaaatatacatctttctttcctttca 40548519  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 13285668 - 13285709
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  13285668 tatttatgtcatttactaaatataaatctttctttcctttca 13285709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 18061454 - 18061413
Alignment:
Q  370 tatttatgtcatttactaaatatacatctttattttctttca 411  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  18061454 tatttatgtcatttattaaatatacatctttctttcctttca 18061413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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