View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15525_low_1 (Length: 787)
Name: NF15525_low_1
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 7450116 - 7450513
Alignment:
| Q |
17 |
caccatccaatcaccaatatgctccatttaattgattcgttgacccacatattatccagaaagccaaatcataaagtttgatcagggtgtgcttgagaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450116 |
caccatccaatcaccaatatgctccatttaattgattcgttgacgcacatattatccagagagccaaatcataaagtttgatcagggtgtgcttgagaac |
7450215 |
T |
|
| Q |
117 |
cacgaaacaatccatgacataaagtttaaaataaaaagtagaaggaaggagcgggtgagaaatcctgtaggttatcttcggatcaaagaacacctgagag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7450216 |
cacgaaacaatccatgacataaagtttaaaataaaaagtagaaggaaggagcgggtgagaaatcctgaaggttatcttcggatcaaagaacacctgagag |
7450315 |
T |
|
| Q |
217 |
attaaacctagctaggcaatgatcgatcttctttggtcccaagattccatttccacttccctcccttggacacatgtcccatattttatgcctatcacat |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7450316 |
attaaacctagctaggcaatgatcgattttctttggtcccaagattccatttccacttccctcccatggacacatgtcccatattttatgcctatcacat |
7450415 |
T |
|
| Q |
317 |
gtcttattaattttgtaacatacattgtctttaattagtactcgatttgtacccaatgctattatcaaatttattagttttcatctctagattgagaacc |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
7450416 |
gtcttat---ttttgtaacatacattgtctttaattagtactcgatttgtacccaatgttattatcaaaattattagtttttatctctagattgagaacc |
7450512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 468 - 771
Target Start/End: Original strand, 7450564 - 7450879
Alignment:
| Q |
468 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaa---------- |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450564 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaaaaattaatta |
7450663 |
T |
|
| Q |
558 |
--tcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatgggcaataattaattc |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7450664 |
aatcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatggggaataattaattc |
7450763 |
T |
|
| Q |
656 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450764 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
7450863 |
T |
|
| Q |
756 |
actagtacttgtgtat |
771 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7450864 |
actagtacttgtgtat |
7450879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 7436198 - 7436325
Alignment:
| Q |
196 |
ggatcaaagaacacctgagagattaaac---ctagctaggcaatgatcgatcttctttggtcccaagattccatttccacttcc-ctccct---tggaca |
288 |
Q |
| |
|
||||||||| ||||||||| ||| || | ||||||||||||||||| ||||||||||||||||||||||||||| || || | |||||| |
|
|
| T |
7436198 |
ggatcaaaggacacctgagggatgaatctagctagctaggcaatgatc----ttctttggtcccaagattccatttccatatctacttgatcaatggaca |
7436293 |
T |
|
| Q |
289 |
catgtcccatattttatgcctatcacatgtct |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
7436294 |
catgtcacatattttatgcctatcacatgtct |
7436325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 699
Target Start/End: Original strand, 7436755 - 7436794
Alignment:
| Q |
660 |
ttttgatgaaagggactagcttaggctttgtcttccaatg |
699 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7436755 |
tttttatgaaagggactagctttggctttgtcttccaatg |
7436794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University