View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_11 (Length: 258)
Name: NF15525_low_11
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 71 - 258
Target Start/End: Complemental strand, 4616342 - 4616156
Alignment:
| Q |
71 |
ttaaatgaattcgtgacggcaagtctcatgacattcatcaacattatccatttctttaacaacagttaattttataataattctactaaaatcataacac |
170 |
Q |
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| T |
4616342 |
ttaaatcaattcgtgacggcaagtttcatgacattcatcaacattatccatttctttaagaacagttaattttataataattctactaaaatcataacaa |
4616243 |
T |
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| Q |
171 |
gggcttgcacatgttttaagtcttaagaaagtaaagacatattttggtcaaaaaataaaatgtcttagaaaggtgtgaaagagaataa |
258 |
Q |
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| T |
4616242 |
gggcttgcacatgttttaggtctt-agaaaggaaaggcatgttttggtcaaaaaataaaatgtcttggaaaggcatgaaagagaataa |
4616156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4616372 - 4616308
Alignment:
| Q |
1 |
atgataaatagccaatcacaattattagtgttaaatcaattcgtgacggcaagtttcatgacatt |
65 |
Q |
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| T |
4616372 |
atgataaatagccaatcacaattattagtgttaaatcaattcgtgacggcaagtttcatgacatt |
4616308 |
T |
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