View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15525_low_12 (Length: 239)

Name: NF15525_low_12
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15525_low_12
NF15525_low_12
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-239)||(42832-43056)
[»] chr7 (10 HSPs)
chr7 (38-152)||(3336592-3336707)
chr7 (84-152)||(3344211-3344279)
chr7 (84-152)||(3346216-3346284)
chr7 (167-239)||(3336753-3336824)
chr7 (178-239)||(3346338-3346399)
chr7 (167-233)||(3340517-3340583)
chr7 (18-61)||(3340369-3340412)
chr7 (19-61)||(3346141-3346183)
chr7 (90-152)||(3340412-3340471)
chr7 (19-61)||(3344141-3344183)
[»] chr6 (5 HSPs)
chr6 (167-239)||(2987303-2987377)
chr6 (91-152)||(2936791-2936852)
chr6 (191-239)||(2979905-2979953)
chr6 (108-142)||(2986141-2986175)
chr6 (107-151)||(2987213-2987257)


Alignment Details
Target: scaffold0024 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 43056 - 42832
Alignment:
Q  18 acataactctcgtttgaccatgtgaactcacaaccaaacaagcatgacattaannnnnnnnn---accatatacaactacatttatactcttctccattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |            |||||||||||||||||||||||||||||||||||    
T  43056 acataactctcgtttgaccatgtgaactcacaaccaaacaagcatgacattgattttttttttttaccatatacaactacatttatactcttctccattt 42957  T
Q  115 tacttaaactatccattttacccattgtgttgaactatcttggtttctatttgtttaataattatttttggaaatcttgttgaatgttttcctgtattat 214  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42956 tacttaaactatccattttacccattgtgttgaactatctcggtttttatttgtttaataattatttttggaaatcttgttgaatgttttcctgtattat 42857  T
Q  215 cattggttttgaaaaggtttaaaaa 239  Q
    ||||| |||||||||||||||||||    
T  42856 cattgattttgaaaaggtttaaaaa 42832  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 3336592 - 3336707
Alignment:
Q  38 tgtgaactcacaaccaaacaagcatgacatt-aannnnnnnnnaccatatacaactacatttatactcttctccattttacttaaactatccattttacc 136  Q
    ||||||||||||||||||||| ||||||||| ||         |||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |    
T  3336592 tgtgaactcacaaccaaacaaccatgacattgaatttctttttaccatataccgctacatttatactcttctccattttacctaaactatccattttatc 3336691  T
Q  137 cattgtgttgaactat 152  Q
    || || ||||||||||    
T  3336692 cactgcgttgaactat 3336707  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 3344211 - 3344279
Alignment:
Q  84 tatacaactacatttatactcttctccattttacttaaactatccattttacccattgtgttgaactat 152  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  3344211 tatactactacatttatactcttctacattttacctaaactatccattttgcccattgtgttgaactat 3344279  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 3346216 - 3346284
Alignment:
Q  84 tatacaactacatttatactcttctccattttacttaaactatccattttacccattgtgttgaactat 152  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  3346216 tatacgactacatttatactcttctacattttacctaaactatccattttgcccattgtgttgaactat 3346284  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 3336753 - 3336824
Alignment:
Q  167 gtttaataattatttttggaaatcttgttgaatgttttcctgtattatcattggttttgaaaaggtttaaaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||| |||| | |||||||||||||    
T  3336753 gtttaataattatttttggaaatcttgttgaatgtttt-tagtattatcatttgtttcgtaaaggtttaaaaa 3336824  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 3346338 - 3346399
Alignment:
Q  178 atttttggaaatcttgttgaatgttttcctgtattatcattggttttgaaaaggtttaaaaa 239  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| |||||    
T  3346338 atttttggaaatcttgttgaatgtttttcggtataatcattggtttcgaaaaggttgaaaaa 3346399  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 3340517 - 3340583
Alignment:
Q  167 gtttaataattatttttggaaatcttgttgaatgttttcctgtattatcattggttttgaaaaggtt 233  Q
    |||||||||||||||||||||| |||| |||||||||| |  ||||||||||||||| | |||||||    
T  3340517 gtttaataattatttttggaaaccttgctgaatgtttttcgatattatcattggtttcggaaaggtt 3340583  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3340369 - 3340412
Alignment:
Q  18 acataactctcgtttgaccatgtgaactcacaaccaaacaagca 61  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||    
T  3340369 acataactcacgtttgatcatgtgaactcacaaccaaacaagca 3340412  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3346141 - 3346183
Alignment:
Q  19 cataactctcgtttgaccatgtgaactcacaaccaaacaagca 61  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  3346141 cataactcacgttttaccatgtgaactcacaaccaaacaagca 3346183  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 3340412 - 3340471
Alignment:
Q  90 actacatttatactcttctccattttacttaaactatccattttacccattgtgttgaactat 152  Q
    |||||||||||| |||||   |||||||  ||||||||||||| |||||||||||||||||||    
T  3340412 actacatttatagtcttc---attttaccgaaactatccatttcacccattgtgttgaactat 3340471  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3344141 - 3344183
Alignment:
Q  19 cataactctcgtttgaccatgtgaactcacaaccaaacaagca 61  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||    
T  3344141 cataactcacgttttaccatgtcaactcacaaccaaacaagca 3344183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 2987303 - 2987377
Alignment:
Q  167 gtttaataattatttttggaaatcttgttgaatgttttcctgtat--tatcattggttttgaaaaggtttaaaaa 239  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||| |||||    
T  2987303 gtttaataattatttttggaaatcttgttgaatgttttccagtattatatgattggtttcgaaaaggttgaaaaa 2987377  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 2936791 - 2936852
Alignment:
Q  91 ctacatttatactcttctccattttacttaaactatccattttacccattgtgttgaactat 152  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||| |||| ||||||||||    
T  2936791 ctacatttatattcttcttcattttacctaaactatccattttacctattgcgttgaactat 2936852  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 2979905 - 2979953
Alignment:
Q  191 ttgttgaatgttttcctgtattatcattggttttgaaaaggtttaaaaa 239  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  2979905 ttgttgaatgttttccggtatcatcattggtttcgaaaaggttgaaaaa 2979953  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 2986141 - 2986175
Alignment:
Q  108 tccattttacttaaactatccattttacccattgt 142  Q
    |||||||||||||||||| ||||||||||||||||    
T  2986141 tccattttacttaaactaaccattttacccattgt 2986175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 2987213 - 2987257
Alignment:
Q  107 ctccattttacttaaactatccattttacccattgtgttgaacta 151  Q
    ||||||||||||||||||||||||| | |  ||||||||||||||    
T  2987213 ctccattttacttaaactatccattatgctaattgtgttgaacta 2987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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