View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_14 (Length: 232)
Name: NF15525_low_14
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 2585911 - 2586108
Alignment:
| Q |
18 |
agcacaaacacttacacaaaaataacaatgacaaatcgacacacataatcaatttgagaaaatgaatcattttaaagtaatcacatgtgtcagcgtagac |
117 |
Q |
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| T |
2585911 |
agcacaaacacttacacgaaaataacacagacaaatcgacacacataatcaatttgagaaaatgaatcattttaaagtaatcacatgtgtcagcgtagac |
2586010 |
T |
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| Q |
118 |
agtgacacgtgacagacactggacacaccattaatcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttag |
215 |
Q |
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| T |
2586011 |
agtgacacgtaacagacactggacacaccattaatcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttag |
2586108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 2619660 - 2619798
Alignment:
| Q |
73 |
gagaaaatgaatcattttaaagtaatcacatgtgtcagcgtagacagtgacacgtgacagacactggacacaccattaatcagaagtgtcggttctacaa |
172 |
Q |
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|||||||||||||||||||| ||||||||||||||| || ||| |||||| ||||| ||||||||||| || | |||||||||||||| | |||||| |
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| T |
2619660 |
gagaaaatgaatcattttaatgtaatcacatgtgtcgacg---acactgacacatgacaaacactggacacgccttcaatcagaagtgtcgatgctacaa |
2619756 |
T |
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| Q |
173 |
agttgttgattatatatatttttcttatgtggcagggctttag |
215 |
Q |
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| T |
2619757 |
agttgttaattatatat-tttttcctatgtggcagggctttag |
2619798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 20204251 - 20204291
Alignment:
| Q |
68 |
aatttgagaaaatgaatcattttaaagtaatcacatgtgtc |
108 |
Q |
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| T |
20204251 |
aatttgagaaaatgaatcatttgaacgtaatcacatgtgtc |
20204291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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